Factsheet for Zm00001d038005_P001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid

Predictor Summary:

plastid 8

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion, plastid
Any Predictor:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

mitochondrion: 27297264

msms PMID: 27297264 doi

D Dahal, KJ Newton, BP Mooney

Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d052665_P001	Maize	cytosol	45.33	96.04
TraesCS1B01G213900.1	Wheat	plastid	84.81	85.82
TraesCS1A01G198900.1	Wheat	plastid	84.58	85.58
TraesCS1D01G202700.1	Wheat	plastid	84.35	85.34
Os05t0345175-01	Rice	cytosol	15.65	84.81
Os05t0345100-00	Rice	plastid	58.64	80.45
Zm00001d010049_P001	Maize	plastid	90.65	77.29
GSMUA_Achr5P07450_001	Banana	plastid	68.93	74.49
GSMUA_Achr9P17890_001	Banana	cytosol	66.82	72.59
GSMUA_Achr2P18920_001	Banana	plastid	70.79	71.8
GSMUA_Achr3P09950_001	Banana	plastid	68.93	69.58
KRH00348	Soybean	cytosol	65.65	64.6
Solyc09g015080.2.1	Tomato	cytosol, plastid	63.78	64.39
PGSC0003DMT400030364	Potato	plastid	64.02	64.32
Bra036782.1-P	Field mustard	cytosol, plastid	61.45	63.84
CDX78026	Canola	cytosol, plastid	61.45	63.84
KRH65546	Soybean	cytosol	62.62	63.66
CDX78958	Canola	cytosol, plastid	41.12	63.54
CDX73635	Canola	cytosol, plastid	41.12	63.54
CDY29572	Canola	cytosol, plastid	41.12	63.54
CDY13832	Canola	cytosol, plastid	41.12	63.54
KRH76050	Soybean	cytosol	62.38	63.42
CDX73705	Canola	cytosol, plastid	60.98	63.35
VIT_01s0137g00470.t01	Wine grape	cytosol	22.43	62.75
AT3G51670.1	Thale cress	cytosol	58.88	61.61
VIT_08s0058g00640.t01	Wine grape	cytosol, mitochondrion, nucleus	64.49	61.47
CDX90637	Canola	cytosol	54.44	57.96
Bra012843.1-P	Field mustard	cytosol	57.48	55.66
Zm00001d041705_P001	Maize	cytosol, mitochondrion	10.51	42.06
Zm00001d005304_P001	Maize	mitochondrion	26.4	41.54
Zm00001d005249_P001	Maize	mitochondrion	26.87	41.52
Zm00001d043169_P001	Maize	cytosol	19.86	40.28
CDY29036	Canola	cytosol, endoplasmic reticulum, mitochondrion, nucleus	54.44	39.09
HORVU1Hr1G051510.3	Barley	plastid	40.65	37.18
Zm00001d046995_P001	Maize	plasma membrane	42.52	34.4
Zm00001d042664_P001	Maize	plasma membrane	42.52	31.87
Zm00001d012254_P003	Maize	mitochondrion	40.89	31.47
Zm00001d038262_P001	Maize	plasma membrane	42.99	29.68
Zm00001d010205_P002	Maize	cytosol	33.41	26.53

Protein Annotations

Gene3D:3.40.525.10	MapMan:35.1	UniProt:A0A1D6M2P9	ProteinID:AQK85459.1	InterPro:CRAL-TRIO_dom	InterPro:CRAL-TRIO_dom_sf
InterPro:CRAL/TRIO_N_dom	InterPro:CRAL/TRIO_N_dom_sf	InterPro:GOLD_dom	InterPro:GOLD_dom_sf	InterPro:IPR001251	InterPro:IPR009038
InterPro:IPR036865	PFAM:PF00650	PFAM:PF03765	PFscan:PS50191	PFscan:PS50866	PANTHER:PTHR23324
PANTHER:PTHR23324:SF57	SMART:SM00516	SUPFAM:SSF101576	SUPFAM:SSF46938	SUPFAM:SSF52087	UniParc:UPI000221B199
EnsemblPlantsGene:Zm00001d038005	EnsemblPlants:Zm00001d038005_P001	EnsemblPlants:Zm00001d038005_T001	SEG:seg	:	:

Description

Putative patellin family protein

Coordinates

chr6:+:144871781..144875663

Molecular Weight (calculated)

47088.4 Da

IEP (calculated)

8.403

GRAVY (calculated)

-0.173

Length

428 amino acids

Sequence
(BLAST)

001: MSPATTPLPA PVAAPASKGG KRSLMSSLMD ATALLRSSSF KEDSYVAAAL PASELRALAD LKALVATHPD PISIWGVPLN PHSPPPGAAN DDADERADVV
101: LLKFLRARDF RARDAHAMLL RCAAWRAEFG ADAVVDEELG FKELEGVVAY MHGWDRDGHP VCYNAYGVFK DRAMYERAFG DGDRLARFLR WRVQVMERGV
201: RALTLRPRGV NAIIQVTDLR DMPKRELRAA SNQILSLFQD NYPEMVARKV FINVPWYFSV LFSMVSPFLT ERTKSKFVIA REGNVAETLY KFIRPELVPV
301: QYGGLSRAGE LENGPPKPAS EFTIKGGEKV FLEIDGIEAG ATITWDLVVG GWDLEYGAEY VPAADGSYTL CVEKARTVPA TTADADAGPL HNAFTAREAG
401: RMVLSIDNSG SRKRKVAAYR YFVRKPSA

Best Arabidopsis Sequence Match ( AT3G51670.1 )
(BLAST)

001: MDASLSPFDH QKTQNTEPKK SFITSLITLR SNNIKEDTYF VSELKPTEQK SLQELKEKLS ASSSKASSMW GVSLLGGDDK ADVILLKFLR ARDFKVADSL
101: RMLEKCLEWR EEFKAEKLTE EDLGFKDLEG KVAYMRGYDK EGHPVCYNAY GVFKEKEMYE RVFGDEEKLN KFLRWRVQVL ERGVKMLHFK PGGVNSIIQV
201: TDLKDMPKRE LRVASNQILS LFQDNYPELV ATKIFINVPW YFSVIYSMFS PFLTQRTKSK FVMSKEGNAA ETLYKFIRPE DIPVQYGGLS RPTDSQNGPP
301: KPASEFSIKG GEKVNIQIEG IEGGATITWD IVVGGWDLEY SAEFVPNAEE SYAIVVEKPK KMKATDEAVC NSFTTVEAGK LILSVDNTLS RKKKVAAYRY
401: TVRKSTTTV

Arabidopsis Description

PATL6Patellin-6 [Source:UniProtKB/Swiss-Prot;Acc:Q9SCU1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.