Factsheet for Zm00001d041705_P001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, cytosol

Predictor Summary:

mitochondrion 4
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, mitochondrion
Any Predictor:	cytosol, mitochondrion
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d005029_P001
Zm00001d052380_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G72160.1	Zm00001d005029_P001	AT3G54220.1	19228333
AT1G72160.1	Zm00001d052380_P001	AT3G54220.1	19228333

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d043169_P001	Maize	cytosol	70.09	35.55
CDY58916	Canola	cytosol	42.99	33.33
Zm00001d005249_P001	Maize	mitochondrion	78.5	30.32
Zm00001d005304_P001	Maize	mitochondrion	73.83	29.04
Bra000675.1-P	Field mustard	cytosol	55.14	19.03
CDX90715	Canola	cytosol	55.14	19.03
OQU78068	Sorghum	cytosol	86.92	17.68
Zm00001d010205_P002	Maize	cytosol	82.24	16.33
Zm00001d052665_P001	Maize	cytosol	28.97	15.35
Os05t0429400-01	Rice	plasma membrane	83.18	15.21
Zm00001d038262_P001	Maize	plasma membrane	87.85	15.16
TraesCS1D01G268600.1	Wheat	golgi	84.11	14.75
TraesCS1B01G279200.1	Wheat	cytosol	84.11	14.75
TraesCS1A01G268500.1	Wheat	cytosol	84.11	14.75
GSMUA_Achr7P23220_001	Banana	cytosol	67.29	14.4
Zm00001d042664_P001	Maize	plasma membrane	76.64	14.36
Zm00001d012254_P003	Maize	mitochondrion	72.9	14.03
KRH23753	Soybean	cytosol, endoplasmic reticulum, mitochondrion, nucleus	55.14	13.92
HORVU1Hr1G075150.4	Barley	plasma membrane	81.31	13.1
CDX68278	Canola	cytosol	53.27	12.98
GSMUA_Achr5P25970_001	Banana	cytosol	67.29	12.97
GSMUA_Achr3P22170_001	Banana	cytosol	62.62	12.74
VIT_07s0031g03220.t01	Wine grape	cytosol	61.68	12.64
GSMUA_Achr6P18780_001	Banana	cytosol	65.42	12.07
Solyc11g027880.1.1	Tomato	cytosol, endoplasmic reticulum, plastid	54.21	11.84
PGSC0003DMT400065886	Potato	cytosol	54.21	11.81
CDY50441	Canola	plasma membrane	53.27	11.75
GSMUA_Achr11P...	Banana	cytosol, endoplasmic reticulum, plastid	68.22	11.68
KRH63933	Soybean	plasma membrane	59.81	11.49
CDY03654	Canola	nucleus	52.34	11.45
AT1G72160.1	Thale cress	nucleus	52.34	11.43
KRH59683	Soybean	cytosol	57.01	11.32
KRH54012	Soybean	nucleus	58.88	11.31
Bra003891.1-P	Field mustard	cytosol	53.27	11.31
Bra008013.1-P	Field mustard	nucleus	52.34	11.29
KRH44929	Soybean	endoplasmic reticulum	60.75	11.28
CDX82180	Canola	nucleus	51.4	11.25
VIT_18s0041g00420.t01	Wine grape	cytosol	59.81	11.0
KRH41016	Soybean	endoplasmic reticulum	58.88	10.96
Zm00001d046995_P001	Maize	plasma membrane	53.27	10.78
KRH23751	Soybean	endoplasmic reticulum	60.75	10.73
Solyc11g051160.1.1	Tomato	extracellular, plastid	58.88	10.7
Zm00001d038005_P001	Maize	mitochondrion, plastid	42.06	10.51
PGSC0003DMT400013297	Potato	cytosol	56.07	10.4
VIT_18s0041g00430.t01	Wine grape	cytosol	58.88	10.4
Solyc06g064940.2.1	Tomato	nucleus	56.07	10.34
Bra003892.1-P	Field mustard	cytosol	48.6	9.96
CDX96377	Canola	cytosol	50.47	9.71
Bra016084.1-P	Field mustard	cytosol	50.47	9.68
Bra008012.1-P	Field mustard	cytosol	50.47	9.61
Zm00001d010049_P001	Maize	plastid	44.86	9.56
CDY03655	Canola	cytosol	50.47	9.56
VIT_05s0029g01570.t01	Wine grape	cytosol	35.51	9.45
AT1G72150.1	Thale cress	cytosol	50.47	9.42
CDX68279	Canola	cytosol	46.73	9.42
CDX82182	Canola	cytosol	48.6	9.04
AT1G22530.1	Thale cress	cytosol	56.07	8.78
KRG99105	Soybean	cytosol	12.15	8.78
AT4G09160.1	Thale cress	cytosol	54.21	8.68
CDY05051	Canola	nucleus	55.14	8.5
Bra040854.1-P	Field mustard	cytosol	53.27	8.07
CDY66581	Canola	cytosol	41.12	7.03
CDY71842	Canola	cytosol	30.84	6.86
CDY21368	Canola	cytosol	35.51	5.83
CDY71835	Canola	cytosol	3.74	1.4
VIT_09s0002g09040.t01	Wine grape	cytosol	0.0	0.0

Protein Annotations

EnsemblPlants:Zm00001d041705_P001	EnsemblPlants:Zm00001d041705_T001	EnsemblPlantsGene:Zm00001d041705	Gene3D:3.40.525.10	InterPro:CRAL-TRIO_dom	InterPro:CRAL-TRIO_dom_sf
InterPro:IPR001251	InterPro:IPR036865	PANTHER:PTHR23324	PANTHER:PTHR23324:SF143	PFAM:PF00650	ProteinID:ONM33519.1
SUPFAM:SSF52087	UniParc:UPI000843C5B3	UniProt:A0A1D6MXR7	MapMan:35.1	:	:

Description

Patellin-1

Coordinates

chr3:-:134132061..134132760

Molecular Weight (calculated)

11806.7 Da

IEP (calculated)

4.172

GRAVY (calculated)

-0.229

Length

107 amino acids

Sequence
(BLAST)

001: MSSFLTQRTK SKIAFCSPDR SAETLFRYVT PEQVPVQFGG LYKEDDTEFS ASNAVTELTV KPSSKETVEV PATEGSTVVW ELRVLGWEVS YGAQFAPDAE
101: DGYTVIV

Best Arabidopsis Sequence Match ( AT4G09160.2 )
(BLAST)

001: MSQDSATTTP PPPLTSDVSM PSGEEDEPKH VTSEEEAPVT SETNLKLPLM PELEESNHTA EVVSEKVTPE TMTLESEGLN HAAEDSEQTH EVTPETETAK
101: LEVLNHTAED SEQTHEVTPE TETVKSEVLN HAAEDSEQPR GVTPTPETET SEADTSLLVT SETEEPNHAA EDYSETEPSQ KLMLEQRRKY MEVEDWTEPE
201: LPDEAVLEAA ASVPEPKQPE PQTPPPPPST TTSTVASRSL AEMMNREEAE VEEKQKIQIP RSLGSFKEET NKISDLSETE LNALQELRHL LQVSQDSSKT
301: SIWGVPLLKD DRTDVVLLKF LRARDFKPQE AYSMLNKTLQ WRIDFNIEEL LDENLGDDLD KVVFMQGQDK ENHPVCYNVY GEFQNKDLYQ KTFSDEEKRE
401: RFLRWRIQFL EKSIRNLDFV AGGVSTICQV NDLKNSPGPG KTELRLATKQ ALHLLQDNYP EFVSKQIFIN VPWWYLAFYR IISPFMSQRS KSKLVFAGPS
501: RSAETLLKYI SPEHVPVQYG GLSVDNCECN SDFTHDDIAT EITVKPTTKQ TVEIIVYEKC TIVWEIRVVG WEVSYGAEFV PENKEGYTVI IQKPRKMTAK
601: NELVVSHSFK VGEVGRILLT VDNPTSTKKM LIYRFKVKPL ACE

Arabidopsis Description

PATL5Patellin-5 [Source:UniProtKB/Swiss-Prot;Acc:Q9M0R2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.