Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G72160.1 | CDX73496 | AT3G54220.1 | 19228333 |
| AT1G72160.1 | CDX78219 | AT3G54220.1 | 19228333 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY03654 | Canola | nucleus | 97.34 | 97.34 |
| CDY50441 | Canola | plasma membrane | 90.39 | 91.13 |
| AT1G72160.1 | Thale cress | nucleus | 86.91 | 86.73 |
| CDX68278 | Canola | cytosol | 77.71 | 86.56 |
| VIT_09s0002g09040.t01 | Wine grape | cytosol | 19.02 | 81.58 |
| CDX90715 | Canola | cytosol | 47.65 | 75.16 |
| KRH23753 | Soybean | cytosol, endoplasmic reticulum, mitochondrion, nucleus | 55.21 | 63.68 |
| PGSC0003DMT400065886 | Potato | cytosol | 62.58 | 62.32 |
| Solyc11g027880.1.1 | Tomato | cytosol, endoplasmic reticulum, plastid | 62.37 | 62.24 |
| GSMUA_Achr2P08100_001 | Banana | cytosol | 47.65 | 58.69 |
| HORVU3Hr1G082150.1 | Barley | cytosol | 39.67 | 56.4 |
| GSMUA_Achr9P08580_001 | Banana | cytosol, plasma membrane | 52.56 | 56.36 |
| Zm00001d005249_P001 | Maize | mitochondrion | 31.29 | 55.23 |
| Zm00001d043169_P001 | Maize | cytosol | 22.9 | 53.08 |
| Zm00001d005304_P001 | Maize | mitochondrion | 29.45 | 52.94 |
| CDY58916 | Canola | cytosol | 14.72 | 52.17 |
| Zm00001d041705_P001 | Maize | cytosol, mitochondrion | 11.25 | 51.4 |
| GSMUA_Achr7P23220_001 | Banana | cytosol | 52.15 | 51.0 |
| VIT_05s0029g01570.t01 | Wine grape | cytosol | 41.1 | 50.0 |
| VIT_18s0041g00420.t01 | Wine grape | cytosol | 57.87 | 48.63 |
| GSMUA_Achr3P22170_001 | Banana | cytosol | 49.9 | 46.39 |
| GSMUA_Achr6P07270_001 | Banana | cytosol, nucleus, plastid | 49.08 | 46.15 |
| CDX78958 | Canola | cytosol, plastid | 25.97 | 45.85 |
| CDX73635 | Canola | cytosol, plastid | 25.97 | 45.85 |
| CDY29572 | Canola | cytosol, plastid | 25.97 | 45.85 |
| CDY13832 | Canola | cytosol, plastid | 25.97 | 45.85 |
| CDX78026 | Canola | cytosol, plastid | 37.83 | 44.9 |
| CDX73705 | Canola | cytosol, plastid | 37.42 | 44.42 |
| GSMUA_Achr5P25970_001 | Banana | cytosol | 50.1 | 44.14 |
| GSMUA_Achr6P18780_001 | Banana | cytosol | 51.94 | 43.79 |
| CDX90637 | Canola | cytosol | 35.79 | 43.53 |
| CDY05051 | Canola | nucleus | 61.35 | 43.23 |
| CDY71835 | Canola | cytosol | 24.74 | 42.31 |
| Zm00001d012254_P003 | Maize | mitochondrion | 48.06 | 42.27 |
| Zm00001d042664_P001 | Maize | plasma membrane | 48.47 | 41.51 |
| EES10230 | Sorghum | cytosol | 41.92 | 40.04 |
| CDY02316 | Canola | cytosol | 35.17 | 39.91 |
| KXG33790 | Sorghum | cytosol | 48.06 | 39.83 |
| TraesCS3B01G417500.1 | Wheat | golgi | 47.03 | 39.79 |
| TraesCS3A01G385300.1 | Wheat | cytosol | 46.83 | 39.62 |
| Os05t0429400-01 | Rice | plasma membrane | 47.24 | 39.49 |
| CDX68279 | Canola | cytosol | 42.74 | 39.36 |
| TraesCS3D01G378300.1 | Wheat | cytosol | 47.24 | 39.35 |
| Os01t0874700-01 | Rice | plasma membrane | 48.88 | 38.99 |
| GSMUA_Achr11P... | Banana | cytosol, endoplasmic reticulum, plastid | 49.49 | 38.72 |
| Zm00001d038262_P001 | Maize | plasma membrane | 48.06 | 37.9 |
| CDX96377 | Canola | cytosol | 42.94 | 37.77 |
| TraesCS1A01G268500.1 | Wheat | cytosol | 47.03 | 37.7 |
| TraesCS1B01G279200.1 | Wheat | cytosol | 47.03 | 37.7 |
| TraesCS1D01G268600.1 | Wheat | golgi | 46.63 | 37.38 |
| CDY03655 | Canola | cytosol | 42.94 | 37.17 |
| CDX77578 | Canola | cytosol | 40.29 | 37.03 |
| OQU78068 | Sorghum | cytosol | 39.67 | 36.88 |
| CDX82182 | Canola | cytosol | 43.35 | 36.87 |
| CDY50723 | Canola | nucleus | 39.47 | 36.42 |
| CDY09549 | Canola | nucleus | 39.67 | 36.26 |
| HORVU3Hr1G082110.2 | Barley | plastid | 47.24 | 35.81 |
| CDY71842 | Canola | cytosol | 35.17 | 35.76 |
| Zm00001d010205_P002 | Maize | cytosol | 39.26 | 35.62 |
| HORVU1Hr1G075150.4 | Barley | plasma membrane | 47.85 | 35.24 |
| CDY21368 | Canola | cytosol | 39.88 | 29.91 |
| CDY29036 | Canola | cytosol, endoplasmic reticulum, mitochondrion, nucleus | 35.58 | 29.19 |
| CDY66581 | Canola | cytosol | 36.2 | 28.27 |
Protein Annotations
| Gene3D:3.40.525.10 | MapMan:35.1 | GO:A0A078CZC1 | EnsemblPlants:CDX82180 | ProteinID:CDX82180 | ProteinID:CDX82180.1 |
| InterPro:CRAL-TRIO_dom | InterPro:CRAL-TRIO_dom_sf | InterPro:CRAL/TRIO_N_dom | InterPro:CRAL/TRIO_N_dom_sf | InterPro:GOLD_dom | EnsemblPlantsGene:GSBRNA2T00137259001 |
| InterPro:IPR001251 | InterPro:IPR009038 | InterPro:IPR036865 | PFAM:PF00650 | PFAM:PF03765 | PRINTS:PR00180 |
| PFscan:PS50191 | PFscan:PS50866 | PANTHER:PTHR23324 | PANTHER:PTHR23324:SF48 | SMART:SM00516 | SMART:SM01100 |
| SUPFAM:SSF46938 | SUPFAM:SSF52087 | UniParc:UPI0004EEBDBA | SEG:seg | : | : |
Description
BnaC02g21100D
Coordinates
chrLK031827:+:1705075..1707237
Molecular Weight (calculated)
55846.0 Da
IEP (calculated)
5.176
GRAVY (calculated)
-0.623
Length
489 amino acids
Sequence
(BLAST)
(BLAST)
001: MAEESITTTT LATPENQPSS GLTPPQESNS THQVLATETE TLEQATETNP PETAVTAAAQ PEVTPEEHHP PKVTETQTAS TEKKETSQKE EASEEDKRIP
101: QNLGSFKEES SKLSDLSDSE KKSLDELKHL VRDALDNHQF DGSNAPEEVT IWGVPLLKDD RSDVVLLKFL RARDFKVKDS LAMLKNTVKW RREFKIDELV
201: DEDLVDDLDK VVFMHGHDRE GHPVCYNVYG EFQNKELYNK TFSDEEKRKH FLRTRIQFLE RSIRKLDFSS GGVSTIFQIN DMKNSPGLGK KELRSATKQA
301: VQLLQDNYPE FVFKQAFINV PWWYLVFYTV IGPFMTPRSK SKLVFAGPSR SAETLFKYIS PEQVPVQYGG LSVDPCDCNP DFSLEDPASE VIVKPGTKQT
401: VEIIIYEKCE IVWEIRVIGW EVRYKAEFVP EEKDAYTVVV QKPRKMKPFD EPVLTQSFKV NELGKVLLTV DNPTSKKKKL VYRFNVKPL
101: QNLGSFKEES SKLSDLSDSE KKSLDELKHL VRDALDNHQF DGSNAPEEVT IWGVPLLKDD RSDVVLLKFL RARDFKVKDS LAMLKNTVKW RREFKIDELV
201: DEDLVDDLDK VVFMHGHDRE GHPVCYNVYG EFQNKELYNK TFSDEEKRKH FLRTRIQFLE RSIRKLDFSS GGVSTIFQIN DMKNSPGLGK KELRSATKQA
301: VQLLQDNYPE FVFKQAFINV PWWYLVFYTV IGPFMTPRSK SKLVFAGPSR SAETLFKYIS PEQVPVQYGG LSVDPCDCNP DFSLEDPASE VIVKPGTKQT
401: VEIIIYEKCE IVWEIRVIGW EVRYKAEFVP EEKDAYTVVV QKPRKMKPFD EPVLTQSFKV NELGKVLLTV DNPTSKKKKL VYRFNVKPL
001: MAEEPTTTTL VTPEKLPSPS LTPSEVSEST QDALPTETET LEKVTETNPP ETADTTTKPE EETAAEHHPP TVTETETAST EKQEVKDEAS QKEVAEEKKS
101: MIPQNLGSFK EESSKLSDLS NSEKKSLDEL KHLVREALDN HQFTNTPEEV KIWGIPLLED DRSDVVLLKF LRAREFKVKD SFAMLKNTIK WRKEFKIDEL
201: VEEDLVDDLD KVVFMHGHDR EGHPVCYNVY GEFQNKELYN KTFSDEEKRK HFLRTRIQFL ERSIRKLDFS SGGVSTIFQV NDMKNSPGLG KKELRSATKQ
301: AVELLQDNYP EFVFKQAFIN VPWWYLVFYT VIGPFMTPRS KSKLVFAGPS RSAETLFKYI SPEQVPVQYG GLSVDPCDCN PDFSLEDSAS EITVKPGTKQ
401: TVEIIIYEKC ELVWEIRVTG WEVSYKAEFV PEEKDAYTVV IQKPRKMRPS DEPVLTHSFK VNELGKVLLT VDNPTSKKKK LVYRFNVKPL
101: MIPQNLGSFK EESSKLSDLS NSEKKSLDEL KHLVREALDN HQFTNTPEEV KIWGIPLLED DRSDVVLLKF LRAREFKVKD SFAMLKNTIK WRKEFKIDEL
201: VEEDLVDDLD KVVFMHGHDR EGHPVCYNVY GEFQNKELYN KTFSDEEKRK HFLRTRIQFL ERSIRKLDFS SGGVSTIFQV NDMKNSPGLG KKELRSATKQ
301: AVELLQDNYP EFVFKQAFIN VPWWYLVFYT VIGPFMTPRS KSKLVFAGPS RSAETLFKYI SPEQVPVQYG GLSVDPCDCN PDFSLEDSAS EITVKPGTKQ
401: TVEIIIYEKC ELVWEIRVTG WEVSYKAEFV PEEKDAYTVV IQKPRKMRPS DEPVLTHSFK VNELGKVLLT VDNPTSKKKK LVYRFNVKPL
Arabidopsis Description
PATL3Patellin-3 [Source:UniProtKB/Swiss-Prot;Acc:Q56Z59]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.