CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, endoplasmic reticulum, nucleus, cytosol

Predictor Summary:

nucleus 1
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161
endoplasmic reticulum: 28499913
mitochondrion: 28499913

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH00551
KRH40615

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G72160.1	KRH00551	AT3G54220.1	19228333
AT1G72160.1	KRH40615	AT3G54220.1	19228333

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_09s0002g09040.t01	Wine grape	cytosol	21.93	81.58
Bra000675.1-P	Field mustard	cytosol	51.42	70.32
CDX90715	Canola	cytosol	51.42	70.32
KRG99105	Soybean	cytosol	22.17	63.51
HORVU3Hr1G082150.1	Barley	cytosol	48.58	59.88
PGSC0003DMT400065886	Potato	cytosol	67.69	58.45
Solyc11g027880.1.1	Tomato	cytosol, endoplasmic reticulum, plastid	67.22	58.16
GSMUA_Achr2P08100_001	Banana	cytosol	54.01	57.68
Zm00001d005249_P001	Maize	mitochondrion	36.79	56.32
CDY50441	Canola	plasma membrane	64.15	56.08
CDX82180	Canola	nucleus	63.68	55.21
CDY03654	Canola	nucleus	63.68	55.21
Zm00001d041705_P001	Maize	cytosol, mitochondrion	13.92	55.14
Zm00001d043169_P001	Maize	cytosol	27.36	54.98
AT1G72160.1	Thale cress	nucleus	63.44	54.9
Bra008013.1-P	Field mustard	nucleus	63.68	54.44
Zm00001d005304_P001	Maize	mitochondrion	34.91	54.41
Bra003891.1-P	Field mustard	cytosol	63.68	53.57
CDX68278	Canola	cytosol	54.95	53.08
GSMUA_Achr9P08580_001	Banana	cytosol, plasma membrane	56.6	52.63
VIT_05s0029g01570.t01	Wine grape	cytosol	49.06	51.74
VIT_18s0041g00420.t01	Wine grape	cytosol	66.98	48.8
GSMUA_Achr7P23220_001	Banana	cytosol	57.08	48.4
KRH59683	Soybean	cytosol	58.02	45.64
KRH63933	Soybean	plasma membrane	59.67	45.42
KRH54012	Soybean	nucleus	59.2	45.06
GSMUA_Achr3P22170_001	Banana	cytosol	53.54	43.16
GSMUA_Achr6P07270_001	Banana	cytosol, nucleus, plastid	52.83	43.08
KRH44929	Soybean	endoplasmic reticulum	58.49	43.06
KRH41016	Soybean	endoplasmic reticulum	58.25	42.96
GSMUA_Achr6P18780_001	Banana	cytosol	57.55	42.07
Zm00001d012254_P003	Maize	mitochondrion	54.95	41.91
KRH76050	Soybean	cytosol	41.51	41.81
GSMUA_Achr5P25970_001	Banana	cytosol	54.48	41.62
Zm00001d042664_P001	Maize	plasma membrane	55.9	41.51
KRH65546	Soybean	cytosol	41.04	41.33
KRH23751	Soybean	endoplasmic reticulum	58.96	41.25
KXG33790	Sorghum	cytosol	55.66	40.0
AT4G09160.1	Thale cress	cytosol	62.74	39.82
TraesCS3B01G417500.1	Wheat	golgi	54.25	39.79
KRH11846	Soybean	cytosol	43.63	39.78
KRH00348	Soybean	cytosol	40.8	39.77
KRH36854	Soybean	cytosol	43.63	39.61
TraesCS3A01G385300.1	Wheat	cytosol	53.77	39.45
EES10230	Sorghum	cytosol	47.17	39.06
TraesCS3D01G378300.1	Wheat	cytosol	54.01	39.01
Os05t0429400-01	Rice	plasma membrane	53.77	38.97
Os01t0874700-01	Rice	plasma membrane	55.42	38.34
OQU78068	Sorghum	cytosol	47.17	38.02
CDY05051	Canola	nucleus	62.03	37.9
GSMUA_Achr11P...	Banana	cytosol, endoplasmic reticulum, plastid	54.95	37.28
TraesCS1A01G268500.1	Wheat	cytosol	53.07	36.89
TraesCS1D01G268600.1	Wheat	golgi	52.83	36.72
TraesCS1B01G279200.1	Wheat	cytosol	52.59	36.56
Zm00001d038262_P001	Maize	plasma membrane	52.59	35.97
HORVU3Hr1G082110.2	Barley	plastid	54.25	35.66
HORVU1Hr1G075150.4	Barley	plasma membrane	53.3	34.04
Zm00001d010205_P002	Maize	cytosol	41.51	32.65
KRH32187	Soybean	cytosol	34.2	30.72
KRH19560	Soybean	cytosol	33.73	30.43

Protein Annotations

Gene3D:3.40.525.10	MapMan:35.1	EMBL:ACUP02007160	InterPro:CRAL-TRIO_dom	InterPro:CRAL-TRIO_dom_sf	InterPro:CRAL/TRIO_N_dom
InterPro:CRAL/TRIO_N_dom_sf	ncoils:Coil	EnsemblPlantsGene:GLYMA_12G001900	GO:GO:0005575	GO:GO:0006810	GO:GO:0008150
GO:GO:0016020	GO:GO:0016021	InterPro:GOLD_dom	UniProt:I1LNP2	InterPro:IPR001251	InterPro:IPR009038
InterPro:IPR036865	EnsemblPlants:KRH23753	ProteinID:KRH23753	ProteinID:KRH23753.1	PFAM:PF00650	PFAM:PF03765
PFscan:PS50191	PFscan:PS50866	PANTHER:PTHR23324	PANTHER:PTHR23324:SF48	SMART:SM00516	SMART:SM01100
SUPFAM:SSF46938	SUPFAM:SSF52087	UniParc:UPI0001B32C66	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr12:-:151083..153245

Molecular Weight (calculated)

48913.3 Da

IEP (calculated)

5.084

GRAVY (calculated)

-0.459

Length

424 amino acids

Sequence
(BLAST)

001: MAQNDSNPTP PPEPHVAAEP ITEDLVQDKE EEDDSSKIVI PVPESESLSL KEDSNRVSDS EKNAIDELKK LLKEELEDEE VSIWGVPLFK DDRTDVILLK
101: FLRARELKVK DALVMFQNTL RWRKDFNIDA LLDEDLGDHL EKVVFMHGHG REGHPVCYNV YGEFQNKDLY HKAFSSQDNR NKFLRWRIQL LERSIRHLDF
201: TPSSGINTIF QVNDLKNSPG PAKRELRLAT KQALQLLQDN YPEFVAKQVF INVPWWYLAF YTMINPFLTS RTKSKFVFAG PSKSPDTLFK YISPEQVPVQ
301: YGGLSVDFCD CNPDFTMSDP VTEIPIKPTT KQTVEIAIYE KCIIVWELRV VGWEVSYNAE FKPDVEDAYT VIIQKATKMS PTDEPVVSNS FKVVELGKLL
401: LTIDNPTLKK KRLLYRFKIK PYSD

Best Arabidopsis Sequence Match ( AT1G72160.1 )
(BLAST)

001: MAEEPTTTTL VTPEKLPSPS LTPSEVSEST QDALPTETET LEKVTETNPP ETADTTTKPE EETAAEHHPP TVTETETAST EKQEVKDEAS QKEVAEEKKS
101: MIPQNLGSFK EESSKLSDLS NSEKKSLDEL KHLVREALDN HQFTNTPEEV KIWGIPLLED DRSDVVLLKF LRAREFKVKD SFAMLKNTIK WRKEFKIDEL
201: VEEDLVDDLD KVVFMHGHDR EGHPVCYNVY GEFQNKELYN KTFSDEEKRK HFLRTRIQFL ERSIRKLDFS SGGVSTIFQV NDMKNSPGLG KKELRSATKQ
301: AVELLQDNYP EFVFKQAFIN VPWWYLVFYT VIGPFMTPRS KSKLVFAGPS RSAETLFKYI SPEQVPVQYG GLSVDPCDCN PDFSLEDSAS EITVKPGTKQ
401: TVEIIIYEKC ELVWEIRVTG WEVSYKAEFV PEEKDAYTVV IQKPRKMRPS DEPVLTHSFK VNELGKVLLT VDNPTSKKKK LVYRFNVKPL

Arabidopsis Description

PATL3Patellin-3 [Source:UniProtKB/Swiss-Prot;Acc:Q56Z59]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.