Factsheet for Bra008013.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra007056.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G72160.1	Bra007056.1-P	AT3G54220.1	19228333

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY03654	Canola	nucleus	98.59	100.0
Bra003891.1-P	Field mustard	cytosol	88.31	86.9
AT1G72160.1	Thale cress	nucleus	85.08	86.12
VIT_09s0002g09040.t01	Wine grape	cytosol	18.75	81.58
Bra000675.1-P	Field mustard	cytosol	46.77	74.84
KRH23753	Soybean	cytosol, endoplasmic reticulum, mitochondrion, nucleus	54.44	63.68
PGSC0003DMT400065886	Potato	cytosol	61.49	62.12
Solyc11g027880.1.1	Tomato	cytosol, endoplasmic reticulum, plastid	61.29	62.04
GSMUA_Achr2P08100_001	Banana	cytosol	46.77	58.44
HORVU3Hr1G082150.1	Barley	cytosol	39.31	56.69
GSMUA_Achr9P08580_001	Banana	cytosol, plasma membrane	51.81	56.36
Zm00001d005249_P001	Maize	mitochondrion	31.05	55.6
Zm00001d005304_P001	Maize	mitochondrion	29.23	53.31
Zm00001d043169_P001	Maize	cytosol	22.58	53.08
Zm00001d041705_P001	Maize	cytosol, mitochondrion	11.29	52.34
GSMUA_Achr7P23220_001	Banana	cytosol	51.81	51.4
VIT_05s0029g01570.t01	Wine grape	cytosol	40.73	50.25
VIT_18s0041g00420.t01	Wine grape	cytosol	57.26	48.8
GSMUA_Achr3P22170_001	Banana	cytosol	49.19	46.39
GSMUA_Achr6P07270_001	Banana	cytosol, nucleus, plastid	48.39	46.15
Bra036782.1-P	Field mustard	cytosol, plastid	37.3	44.9
GSMUA_Achr5P25970_001	Banana	cytosol	49.6	44.32
GSMUA_Achr6P18780_001	Banana	cytosol	51.61	44.14
Zm00001d012254_P003	Maize	mitochondrion	47.98	42.81
Zm00001d042664_P001	Maize	plasma membrane	48.39	42.03
EES10230	Sorghum	cytosol	41.73	40.43
KXG33790	Sorghum	cytosol	47.98	40.34
TraesCS3B01G417500.1	Wheat	golgi	46.98	40.31
TraesCS3A01G385300.1	Wheat	cytosol	46.77	40.14
TraesCS3D01G378300.1	Wheat	cytosol	47.18	39.86
Os05t0429400-01	Rice	plasma membrane	46.98	39.83
Bra012843.1-P	Field mustard	cytosol	35.48	39.82
Os01t0874700-01	Rice	plasma membrane	48.79	39.48
GSMUA_Achr11P...	Banana	cytosol, endoplasmic reticulum, plastid	49.4	39.2
Bra023118.1-P	Field mustard	cytosol	38.51	38.9
TraesCS1B01G279200.1	Wheat	cytosol	46.98	38.2
Zm00001d038262_P001	Maize	plasma membrane	47.58	38.06
TraesCS1A01G268500.1	Wheat	cytosol	46.77	38.03
Bra016084.1-P	Field mustard	cytosol	42.74	37.99
Bra003892.1-P	Field mustard	cytosol	39.92	37.93
TraesCS1D01G268600.1	Wheat	golgi	46.57	37.87
Bra008012.1-P	Field mustard	cytosol	42.74	37.72
OQU78068	Sorghum	cytosol	39.72	37.45
Bra026229.1-P	Field mustard	cytosol	39.92	37.22
HORVU3Hr1G082110.2	Barley	plastid	47.18	36.28
Zm00001d010205_P002	Maize	cytosol	38.91	35.81
HORVU1Hr1G075150.4	Barley	plasma membrane	47.38	35.39
Bra040854.1-P	Field mustard	cytosol	42.14	29.6

Protein Annotations

Gene3D:3.40.525.10	MapMan:35.1	EnsemblPlantsGene:Bra008013	EnsemblPlants:Bra008013.1	EnsemblPlants:Bra008013.1-P	InterPro:CRAL-TRIO_dom
InterPro:CRAL-TRIO_dom_sf	InterPro:CRAL/TRIO_N_dom	InterPro:CRAL/TRIO_N_dom_sf	InterPro:GOLD_dom	InterPro:IPR001251	InterPro:IPR009038
InterPro:IPR036865	UniProt:M4CUW8	PFAM:PF00650	PFAM:PF03765	PRINTS:PR00180	PFscan:PS50191
PFscan:PS50866	PANTHER:PTHR23324	PANTHER:PTHR23324:SF48	SMART:SM00516	SMART:SM01100	SUPFAM:SSF46938
SUPFAM:SSF52087	UniParc:UPI0002546FE7	SEG:seg	:	:	:

Description

AT1G72160 (E=4e-202) | SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein

Coordinates

chrA02:-:12542878..12544831

Molecular Weight (calculated)

56403.6 Da

IEP (calculated)

5.111

GRAVY (calculated)

-0.624

Length

496 amino acids

Sequence
(BLAST)

001: MAEEYITTTT LATPENQPSS GLTPPQESNS THQVLATETE TPEKATETNP PENSVAAAAQ PEVTPGEHHP PKVTETETAS TEKKETSEKE EAAEEDKRIP
101: QNLGSFKEES SKLSDLSDSE KKSLDELKHL VRDALDNHQF GSVPKPEDGS NAPEEVTIWG VPLLKDDRSD VVLLKFLRAR DFKVKDSLAM LKNTVKWRRE
201: FKIDELVDED LVDDLDKVVF MHGHDREGHP VCYNVYGEFQ NKELYNKTFS DEEKRKHFLR TRIQFLERSI RKLDFSSGGV STIFQINDMK NSPGLGKKEL
301: RSATKQAVQL LQDNYPEFVF KQAFINVPWW YLVFYTVIGP FMTPRSKSKL VFAGPSRSAE TLFKYISPEQ VPVQYGGLSV DPCDCNPDFS LDDPASEVIV
401: KPGTKQTVEI IIYEKCEIVW EIRVIGWEVS YKAEFVPEEK DAYTVVVQKP RKMKPFDEPV LTQSFKVNEL GKVLLTVDNP TSKKKKLVYR FSVKPL

Best Arabidopsis Sequence Match ( AT1G72160.1 )
(BLAST)

001: MAEEPTTTTL VTPEKLPSPS LTPSEVSEST QDALPTETET LEKVTETNPP ETADTTTKPE EETAAEHHPP TVTETETAST EKQEVKDEAS QKEVAEEKKS
101: MIPQNLGSFK EESSKLSDLS NSEKKSLDEL KHLVREALDN HQFTNTPEEV KIWGIPLLED DRSDVVLLKF LRAREFKVKD SFAMLKNTIK WRKEFKIDEL
201: VEEDLVDDLD KVVFMHGHDR EGHPVCYNVY GEFQNKELYN KTFSDEEKRK HFLRTRIQFL ERSIRKLDFS SGGVSTIFQV NDMKNSPGLG KKELRSATKQ
301: AVELLQDNYP EFVFKQAFIN VPWWYLVFYT VIGPFMTPRS KSKLVFAGPS RSAETLFKYI SPEQVPVQYG GLSVDPCDCN PDFSLEDSAS EITVKPGTKQ
401: TVEIIIYEKC ELVWEIRVTG WEVSYKAEFV PEEKDAYTVV IQKPRKMRPS DEPVLTHSFK VNELGKVLLT VDNPTSKKKK LVYRFNVKPL

Arabidopsis Description

PATL3Patellin-3 [Source:UniProtKB/Swiss-Prot;Acc:Q56Z59]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.