Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX82180 | Canola | nucleus | 86.73 | 86.91 |
| CDY03654 | Canola | nucleus | 86.12 | 86.3 |
| Bra008013.1-P | Field mustard | nucleus | 86.12 | 85.08 |
| CDY50441 | Canola | plasma membrane | 83.06 | 83.92 |
| VIT_09s0002g09040.t01 | Wine grape | cytosol | 18.98 | 81.58 |
| Bra003891.1-P | Field mustard | cytosol | 83.67 | 81.35 |
| CDX68278 | Canola | cytosol | 71.84 | 80.18 |
| KRH23753 | Soybean | cytosol, endoplasmic reticulum, mitochondrion, nucleus | 54.9 | 63.44 |
| PGSC0003DMT400065886 | Potato | cytosol | 61.43 | 61.3 |
| Solyc11g027880.1.1 | Tomato | cytosol, endoplasmic reticulum, plastid | 61.02 | 61.02 |
| GSMUA_Achr2P08100_001 | Banana | cytosol | 47.14 | 58.19 |
| HORVU3Hr1G082150.1 | Barley | cytosol | 40.2 | 57.27 |
| GSMUA_Achr9P08580_001 | Banana | cytosol, plasma membrane | 52.45 | 56.36 |
| Zm00001d005249_P001 | Maize | mitochondrion | 31.63 | 55.96 |
| Zm00001d043169_P001 | Maize | cytosol | 22.86 | 53.08 |
| Zm00001d005304_P001 | Maize | mitochondrion | 29.39 | 52.94 |
| Zm00001d041705_P001 | Maize | cytosol, mitochondrion | 11.43 | 52.34 |
| VIT_05s0029g01570.t01 | Wine grape | cytosol | 41.63 | 50.75 |
| GSMUA_Achr7P23220_001 | Banana | cytosol | 51.22 | 50.2 |
| VIT_18s0041g00420.t01 | Wine grape | cytosol | 58.57 | 49.31 |
| GSMUA_Achr3P22170_001 | Banana | cytosol | 49.59 | 46.2 |
| GSMUA_Achr6P07270_001 | Banana | cytosol, nucleus, plastid | 48.37 | 45.58 |
| AT4G09160.1 | Thale cress | cytosol | 60.41 | 44.31 |
| AT3G51670.1 | Thale cress | cytosol | 36.73 | 44.01 |
| GSMUA_Achr6P18780_001 | Banana | cytosol | 51.84 | 43.79 |
| GSMUA_Achr5P25970_001 | Banana | cytosol | 49.39 | 43.6 |
| Zm00001d012254_P003 | Maize | mitochondrion | 47.55 | 41.91 |
| Zm00001d042664_P001 | Maize | plasma membrane | 47.55 | 40.81 |
| TraesCS3A01G385300.1 | Wheat | cytosol | 47.14 | 39.97 |
| TraesCS3B01G417500.1 | Wheat | golgi | 47.14 | 39.97 |
| TraesCS3D01G378300.1 | Wheat | cytosol | 47.55 | 39.69 |
| EES10230 | Sorghum | cytosol | 41.22 | 39.45 |
| Os05t0429400-01 | Rice | plasma membrane | 46.94 | 39.32 |
| KXG33790 | Sorghum | cytosol | 47.14 | 39.15 |
| GSMUA_Achr11P... | Banana | cytosol, endoplasmic reticulum, plastid | 49.8 | 39.04 |
| Os01t0874700-01 | Rice | plasma membrane | 48.37 | 38.66 |
| Zm00001d038262_P001 | Maize | plasma membrane | 48.57 | 38.39 |
| TraesCS1B01G279200.1 | Wheat | cytosol | 47.76 | 38.36 |
| TraesCS1A01G268500.1 | Wheat | cytosol | 47.55 | 38.2 |
| TraesCS1D01G268600.1 | Wheat | golgi | 47.35 | 38.03 |
| AT1G72150.1 | Thale cress | cytosol | 43.47 | 37.17 |
| OQU78068 | Sorghum | cytosol | 39.8 | 37.07 |
| HORVU3Hr1G082110.2 | Barley | plastid | 47.55 | 36.12 |
| Zm00001d010205_P002 | Maize | cytosol | 38.98 | 35.44 |
| HORVU1Hr1G075150.4 | Barley | plasma membrane | 47.35 | 34.94 |
| AT1G30690.2 | Thale cress | cytosol | 38.37 | 34.81 |
| AT1G22530.1 | Thale cress | cytosol | 44.49 | 31.92 |
Protein Annotations
| Gene3D:3.40.525.10 | MapMan:35.1 | EntrezGene:843547 | ProteinID:AAG51796.1 | ProteinID:AEE35283.1 | EMBL:AK221110 |
| ArrayExpress:AT1G72160 | EnsemblPlantsGene:AT1G72160 | RefSeq:AT1G72160 | TAIR:AT1G72160 | RefSeq:AT1G72160-TAIR-G | EnsemblPlants:AT1G72160.1 |
| TAIR:AT1G72160.1 | EMBL:AY048199 | EMBL:AY133553 | Unigene:At.17888 | InterPro:CRAL-TRIO_dom | InterPro:CRAL-TRIO_dom_sf |
| InterPro:CRAL/TRIO_N_dom | InterPro:CRAL/TRIO_N_dom_sf | ncoils:Coil | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005886 | GO:GO:0007049 | GO:GO:0008150 |
| GO:GO:0008289 | GO:GO:0009987 | GO:GO:0016020 | GO:GO:0051301 | InterPro:GOLD_dom | InterPro:GOLD_dom_sf |
| InterPro:IPR001251 | InterPro:IPR009038 | InterPro:IPR036865 | RefSeq:NP_177361.1 | PFAM:PF00650 | PFAM:PF03765 |
| PO:PO:0000005 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 |
| PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 |
| PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 |
| PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 |
| PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 |
| PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 |
| PO:PO:0025281 | PFscan:PS50191 | PFscan:PS50866 | PANTHER:PTHR23324 | PANTHER:PTHR23324:SF48 | UniProt:Q56Z59 |
| SMART:SM00516 | SMART:SM01100 | SUPFAM:SSF101576 | SUPFAM:SSF46938 | SUPFAM:SSF52087 | UniParc:UPI000009C593 |
| SEG:seg | : | : | : | : | : |
Description
PATL3Patellin-3 [Source:UniProtKB/Swiss-Prot;Acc:Q56Z59]
Coordinates
chr1:-:27153555..27155793
Molecular Weight (calculated)
56107.3 Da
IEP (calculated)
4.959
GRAVY (calculated)
-0.639
Length
490 amino acids
Sequence
(BLAST)
(BLAST)
001: MAEEPTTTTL VTPEKLPSPS LTPSEVSEST QDALPTETET LEKVTETNPP ETADTTTKPE EETAAEHHPP TVTETETAST EKQEVKDEAS QKEVAEEKKS
101: MIPQNLGSFK EESSKLSDLS NSEKKSLDEL KHLVREALDN HQFTNTPEEV KIWGIPLLED DRSDVVLLKF LRAREFKVKD SFAMLKNTIK WRKEFKIDEL
201: VEEDLVDDLD KVVFMHGHDR EGHPVCYNVY GEFQNKELYN KTFSDEEKRK HFLRTRIQFL ERSIRKLDFS SGGVSTIFQV NDMKNSPGLG KKELRSATKQ
301: AVELLQDNYP EFVFKQAFIN VPWWYLVFYT VIGPFMTPRS KSKLVFAGPS RSAETLFKYI SPEQVPVQYG GLSVDPCDCN PDFSLEDSAS EITVKPGTKQ
401: TVEIIIYEKC ELVWEIRVTG WEVSYKAEFV PEEKDAYTVV IQKPRKMRPS DEPVLTHSFK VNELGKVLLT VDNPTSKKKK LVYRFNVKPL
101: MIPQNLGSFK EESSKLSDLS NSEKKSLDEL KHLVREALDN HQFTNTPEEV KIWGIPLLED DRSDVVLLKF LRAREFKVKD SFAMLKNTIK WRKEFKIDEL
201: VEEDLVDDLD KVVFMHGHDR EGHPVCYNVY GEFQNKELYN KTFSDEEKRK HFLRTRIQFL ERSIRKLDFS SGGVSTIFQV NDMKNSPGLG KKELRSATKQ
301: AVELLQDNYP EFVFKQAFIN VPWWYLVFYT VIGPFMTPRS KSKLVFAGPS RSAETLFKYI SPEQVPVQYG GLSVDPCDCN PDFSLEDSAS EITVKPGTKQ
401: TVEIIIYEKC ELVWEIRVTG WEVSYKAEFV PEEKDAYTVV IQKPRKMRPS DEPVLTHSFK VNELGKVLLT VDNPTSKKKK LVYRFNVKPL
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.