Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX77578 | Canola | cytosol | 75.37 | 76.5 |
| Bra026229.1-P | Field mustard | cytosol | 75.0 | 76.13 |
| Bra023118.1-P | Field mustard | cytosol | 69.07 | 75.97 |
| CDY02316 | Canola | cytosol | 60.56 | 75.87 |
| CDY09549 | Canola | nucleus | 73.7 | 74.39 |
| CDY50723 | Canola | nucleus | 70.0 | 71.32 |
| KRH11846 | Soybean | cytosol | 53.52 | 62.15 |
| KRH36854 | Soybean | cytosol | 53.15 | 61.46 |
| VIT_10s0003g05480.t01 | Wine grape | cytosol | 54.07 | 61.34 |
| Solyc02g070210.2.1 | Tomato | cytosol | 50.0 | 57.32 |
| PGSC0003DMT400054383 | Potato | cytosol | 49.07 | 56.38 |
| GSMUA_Achr9P30580_001 | Banana | cytosol | 53.15 | 52.76 |
| EER88801 | Sorghum | cytosol | 46.85 | 48.47 |
| Zm00001d046995_P001 | Maize | plasma membrane | 45.93 | 46.88 |
| HORVU7Hr1G107070.1 | Barley | cytosol | 45.37 | 45.29 |
| TraesCS7A01G466800.1 | Wheat | cytosol | 45.37 | 44.14 |
| TraesCS7B01G368100.1 | Wheat | nucleus | 45.93 | 43.82 |
| TraesCS7D01G454600.1 | Wheat | cytosol | 45.56 | 43.01 |
| Os06t0671800-01 | Rice | endoplasmic reticulum, extracellular, golgi, nucleus, peroxisome, plasma membrane, plastid, vacuole | 28.89 | 42.98 |
| AT3G51670.1 | Thale cress | cytosol | 31.3 | 41.32 |
| AT1G72160.1 | Thale cress | nucleus | 34.81 | 38.37 |
| AT1G72150.1 | Thale cress | cytosol | 34.26 | 32.29 |
| AT1G22530.1 | Thale cress | cytosol | 35.37 | 27.96 |
| AT4G09160.1 | Thale cress | cytosol | 34.44 | 27.84 |
Protein Annotations
| Gene3D:3.40.525.10 | MapMan:35.1 | EntrezGene:839949 | UniProt:A0A178WK99 | ProteinID:AAD25756.1 | ProteinID:AEE31260.1 |
| ProteinID:AEE31261.1 | EMBL:AK317487 | ArrayExpress:AT1G30690 | EnsemblPlantsGene:AT1G30690 | RefSeq:AT1G30690 | TAIR:AT1G30690 |
| RefSeq:AT1G30690-TAIR-G | EnsemblPlants:AT1G30690.2 | TAIR:AT1G30690.2 | EMBL:AY035162 | Unigene:At.17077 | UniProt:B9DHD5 |
| EMBL:BT000959 | InterPro:CRAL-TRIO_dom | InterPro:CRAL-TRIO_dom_sf | InterPro:CRAL/TRIO_N_dom | InterPro:CRAL/TRIO_N_dom_sf | ncoils:Coil |
| GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0005737 | GO:GO:0005829 | GO:GO:0005886 | GO:GO:0007049 | GO:GO:0008150 | GO:GO:0008289 |
| GO:GO:0009987 | GO:GO:0016020 | GO:GO:0051301 | InterPro:GOLD_dom | InterPro:IPR001251 | InterPro:IPR009038 |
| InterPro:IPR036865 | RefSeq:NP_001031119.1 | RefSeq:NP_564360.1 | ProteinID:OAP18749.1 | PFAM:PF00650 | PFAM:PF03765 |
| PO:PO:0000005 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 |
| PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 |
| PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007131 | PO:PO:0007611 |
| PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 |
| PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 |
| PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 |
| PO:PO:0025022 | PO:PO:0025281 | PRINTS:PR00180 | PFscan:PS50191 | PFscan:PS50866 | PANTHER:PTHR23324 |
| PANTHER:PTHR23324:SF96 | UniProt:Q94C59 | SMART:SM00516 | SMART:SM01100 | SUPFAM:SSF46938 | SUPFAM:SSF52087 |
| UniParc:UPI00000ABF35 | SEG:seg | : | : | : | : |
Description
PATL4Patellin-4 [Source:UniProtKB/Swiss-Prot;Acc:Q94C59]
Coordinates
chr1:+:10887607..10890383
Molecular Weight (calculated)
61192.5 Da
IEP (calculated)
4.585
GRAVY (calculated)
-0.586
Length
540 amino acids
Sequence
(BLAST)
(BLAST)
001: MTAEVKVEEK QVESEVVIAP AVVPEETTVK AVVEETKVEE DESKPEGVEK SASFKEESDF FADLKESEKK ALSDLKSKLE EAIVDNTLLK TKKKESSPMK
101: EKKEEVVKPE AEVEKKKEEA AEEKVEEEKK SEAVVTEEAP KAETVEAVVT EEIIPKEEVT TVVEKVEEET KEEEKKTEDV VTEEVKAETI EVEDEDESVD
201: KDIELWGVPL LPSKGAESTD VILLKFLRAR DFKVNEAFEM LKKTLKWRKQ NKIDSILGEE FGEDLATAAY MNGVDRESHP VCYNVHSEEL YQTIGSEKNR
301: EKFLRWRFQL MEKGIQKLNL KPGGVTSLLQ IHDLKNAPGV SRTEIWVGIK KVIETLQDNY PEFVSRNIFI NVPFWFYAMR AVLSPFLTQR TKSKFVVARP
401: AKVRETLLKY IPADELPVQY GGFKTVDDTE FSNETVSEVV VKPGSSETIE IPAPETEGTL VWDIAVLGWE VNYKEEFVPT EEGAYTVIVQ KVKKMGANEG
501: PIRNSFKNSQ AGKIVLTVDN VSGKKKKVLY RYRTKTESSS
101: EKKEEVVKPE AEVEKKKEEA AEEKVEEEKK SEAVVTEEAP KAETVEAVVT EEIIPKEEVT TVVEKVEEET KEEEKKTEDV VTEEVKAETI EVEDEDESVD
201: KDIELWGVPL LPSKGAESTD VILLKFLRAR DFKVNEAFEM LKKTLKWRKQ NKIDSILGEE FGEDLATAAY MNGVDRESHP VCYNVHSEEL YQTIGSEKNR
301: EKFLRWRFQL MEKGIQKLNL KPGGVTSLLQ IHDLKNAPGV SRTEIWVGIK KVIETLQDNY PEFVSRNIFI NVPFWFYAMR AVLSPFLTQR TKSKFVVARP
401: AKVRETLLKY IPADELPVQY GGFKTVDDTE FSNETVSEVV VKPGSSETIE IPAPETEGTL VWDIAVLGWE VNYKEEFVPT EEGAYTVIVQ KVKKMGANEG
501: PIRNSFKNSQ AGKIVLTVDN VSGKKKKVLY RYRTKTESSS
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.