CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

plasma membrane: 26746009

msms PMID: 26746009 doi

S Chen, Y Luo, G Ding, F Xu

National Key Laboratory of Crop Genetic Improvement, and Microelement Research Center, Huazhong Agricultural University, Wuhan 430070, China., National Key Laboratory of Crop Genetic Improvement, and Microelement Research Center, Huazhong Agricultural University, Wuhan 430070, China. Electronic address: fangsenxu@mail.hzau.edu.cn., National Key Laboratory of Crop Genetic Improvement, and Microelement Research Center, Huazhong Agricultural University, Wuhan 430070, China; Key Laboratory of Agricultural Biotechnology of Liaoning Province, College of Biological Science and Technology, Shenyang Agricultural University, Shenyang 110866, China.

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX73496
CDX78219

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G72160.1	CDX73496	AT3G54220.1	19228333
AT1G72160.1	CDX78219	AT3G54220.1	19228333

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX82180	Canola	nucleus	91.13	90.39
Bra003891.1-P	Field mustard	cytosol	93.81	90.28
CDX68278	Canola	cytosol	81.65	90.2
CDY03654	Canola	nucleus	90.93	90.18
AT1G72160.1	Thale cress	nucleus	83.92	83.06
VIT_09s0002g09040.t01	Wine grape	cytosol	19.18	81.58
CDX90715	Canola	cytosol	47.84	74.84
KRH23753	Soybean	cytosol, endoplasmic reticulum, mitochondrion, nucleus	56.08	64.15
PGSC0003DMT400065886	Potato	cytosol	62.27	61.51
Solyc11g027880.1.1	Tomato	cytosol, endoplasmic reticulum, plastid	61.65	61.02
GSMUA_Achr2P08100_001	Banana	cytosol	47.42	57.93
HORVU3Hr1G082150.1	Barley	cytosol	40.0	56.4
GSMUA_Achr9P08580_001	Banana	cytosol, plasma membrane	52.99	56.36
Zm00001d005249_P001	Maize	mitochondrion	31.55	55.23
Zm00001d041705_P001	Maize	cytosol, mitochondrion	11.75	53.27
Zm00001d043169_P001	Maize	cytosol	23.09	53.08
Zm00001d005304_P001	Maize	mitochondrion	29.28	52.21
CDY58916	Canola	cytosol	14.64	51.45
GSMUA_Achr7P23220_001	Banana	cytosol	52.78	51.2
VIT_05s0029g01570.t01	Wine grape	cytosol	41.24	49.75
VIT_18s0041g00420.t01	Wine grape	cytosol	58.35	48.63
GSMUA_Achr3P22170_001	Banana	cytosol	50.1	46.2
GSMUA_Achr6P07270_001	Banana	cytosol, nucleus, plastid	49.28	45.96
CDX78958	Canola	cytosol, plastid	25.98	45.49
CDY13832	Canola	cytosol, plastid	25.98	45.49
CDX73635	Canola	cytosol, plastid	25.98	45.49
CDY29572	Canola	cytosol, plastid	25.98	45.49
CDX78026	Canola	cytosol, plastid	37.94	44.66
CDX73705	Canola	cytosol, plastid	37.53	44.17
GSMUA_Achr5P25970_001	Banana	cytosol	50.52	44.14
CDX90637	Canola	cytosol	36.08	43.53
GSMUA_Achr6P18780_001	Banana	cytosol	51.96	43.45
CDY05051	Canola	nucleus	61.86	43.23
CDY71835	Canola	cytosol	25.36	43.01
Zm00001d012254_P003	Maize	mitochondrion	48.25	42.09
Zm00001d042664_P001	Maize	plasma membrane	48.45	41.16
EES10230	Sorghum	cytosol	42.06	39.84
TraesCS3B01G417500.1	Wheat	golgi	47.42	39.79
TraesCS3A01G385300.1	Wheat	cytosol	47.22	39.62
TraesCS3D01G378300.1	Wheat	cytosol	47.84	39.52
KXG33790	Sorghum	cytosol	48.04	39.49
Os05t0429400-01	Rice	plasma membrane	47.63	39.49
CDY02316	Canola	cytosol	35.05	39.44
Os01t0874700-01	Rice	plasma membrane	49.48	39.15
CDX68279	Canola	cytosol	42.68	38.98
GSMUA_Achr11P...	Banana	cytosol, endoplasmic reticulum, plastid	50.1	38.88
Zm00001d038262_P001	Maize	plasma membrane	48.66	38.06
TraesCS1A01G268500.1	Wheat	cytosol	47.63	37.87
TraesCS1B01G279200.1	Wheat	cytosol	47.63	37.87
CDX96377	Canola	cytosol	43.09	37.59
TraesCS1D01G268600.1	Wheat	golgi	47.22	37.54
OQU78068	Sorghum	cytosol	40.21	37.07
CDY03655	Canola	cytosol	42.89	36.81
CDX82182	Canola	cytosol	43.3	36.52
CDX77578	Canola	cytosol	39.79	36.28
CDY50723	Canola	nucleus	39.38	36.04
Zm00001d010205_P002	Maize	cytosol	39.79	35.81
CDY09549	Canola	nucleus	39.38	35.7
HORVU3Hr1G082110.2	Barley	plastid	47.42	35.66
CDY71842	Canola	cytosol	35.05	35.34
HORVU1Hr1G075150.4	Barley	plasma membrane	48.25	35.24
CDY21368	Canola	cytosol	39.59	29.45
CDY29036	Canola	cytosol, endoplasmic reticulum, mitochondrion, nucleus	35.88	29.19
CDY66581	Canola	cytosol	35.88	27.8

Protein Annotations

Gene3D:3.40.525.10	MapMan:35.1	GO:A0A078IKB6	UniProt:A0A078IKB6	EnsemblPlants:CDY50441	ProteinID:CDY50441
ProteinID:CDY50441.1	InterPro:CRAL-TRIO_dom	InterPro:CRAL-TRIO_dom_sf	InterPro:CRAL/TRIO_N_dom	InterPro:CRAL/TRIO_N_dom_sf	ncoils:Coil
InterPro:GOLD_dom	EnsemblPlantsGene:GSBRNA2T00096705001	InterPro:IPR001251	InterPro:IPR009038	InterPro:IPR036865	PFAM:PF00650
PFAM:PF03765	PRINTS:PR00180	PFscan:PS50191	PFscan:PS50866	PANTHER:PTHR23324	PANTHER:PTHR23324:SF48
SMART:SM00516	SMART:SM01100	SUPFAM:SSF46938	SUPFAM:SSF52087	UniParc:UPI0004EF38C1	SEG:seg

Description

BnaC06g24230DBnaC06g24230D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IKB6]

Coordinates

chrLK032911:-:764..2729

Molecular Weight (calculated)

55413.5 Da

IEP (calculated)

4.932

GRAVY (calculated)

-0.648

Length

485 amino acids

Sequence
(BLAST)

001: MAEESITTTL PTPQNQPPSE LTTPDESKPT LEVSARETET AVTTSTPETE TAAEKPEVTP EEHQPPKVTE TETASTEKKE LGDEKSQQEE ETARIPQNLG
101: SFKEESSNLS DLSDSEKKSL NELKHLVRDA LDNHQFDTGN APEEVTIWGV PLLKDDRSDV VLLKFLRARD FKVKDSLTML KNTIKWRRDF KIDELVDEDL
201: VDDLDKVVFM HGHDREGHPV CYNVYGEFQN KELYNKTFSD EEKRKHFLRT RIQFLERSIR KLDFSSGGVS TIFQINDMKN SPGLGKKELR SATKQAVQLL
301: QDNYPEFVFK QAFINVPWWY LLFYTVIGPF MTPRSKSKLV FAGPSRSAET LFKYISPEQV PVQYGGLSVD PCDCNPDFSL DDPASEVTVK PGTKQTVEII
401: IYEKCEIVWE IRVIGWEVSY KAEFVPEEKD AYTVVVQKPR KMKPADEPVL TQSFKVNELG KVLLTVDNPT SKKKKLVYRF NVKPL

Best Arabidopsis Sequence Match ( AT1G72160.1 )
(BLAST)

001: MAEEPTTTTL VTPEKLPSPS LTPSEVSEST QDALPTETET LEKVTETNPP ETADTTTKPE EETAAEHHPP TVTETETAST EKQEVKDEAS QKEVAEEKKS
101: MIPQNLGSFK EESSKLSDLS NSEKKSLDEL KHLVREALDN HQFTNTPEEV KIWGIPLLED DRSDVVLLKF LRAREFKVKD SFAMLKNTIK WRKEFKIDEL
201: VEEDLVDDLD KVVFMHGHDR EGHPVCYNVY GEFQNKELYN KTFSDEEKRK HFLRTRIQFL ERSIRKLDFS SGGVSTIFQV NDMKNSPGLG KKELRSATKQ
301: AVELLQDNYP EFVFKQAFIN VPWWYLVFYT VIGPFMTPRS KSKLVFAGPS RSAETLFKYI SPEQVPVQYG GLSVDPCDCN PDFSLEDSAS EITVKPGTKQ
401: TVEIIIYEKC ELVWEIRVTG WEVSYKAEFV PEEKDAYTVV IQKPRKMRPS DEPVLTHSFK VNELGKVLLT VDNPTSKKKK LVYRFNVKPL

Arabidopsis Description

PATL3Patellin-3 [Source:UniProtKB/Swiss-Prot;Acc:Q56Z59]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.