Factsheet for TraesCS1D01G268600.1

Subcellular Localization

min:

: max

Winner_takes_all: golgi

Predictor Summary:

cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

golgi: 25769308

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS4A01G191300.1
TraesCS4B01G124000.1
TraesCS4D01G122000.1
TraesCS5A01G144000.1
TraesCS5B01G143100.1
TraesCS5D01G148000.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G72160.1	TraesCS4A01G191300.1	AT3G54220.1	19228333
AT1G72160.1	TraesCS4B01G124000.1	AT3G54220.1	19228333
AT1G72160.1	TraesCS4D01G122000.1	AT3G54220.1	19228333
AT1G72160.1	TraesCS5A01G144000.1	AT3G54220.1	19228333
AT1G72160.1	TraesCS5B01G143100.1	AT3G54220.1	19228333
AT1G72160.1	TraesCS5D01G148000.1	AT3G54220.1	19228333

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1B01G279200.1	Wheat	cytosol	94.92	94.92
TraesCS1A01G268500.1	Wheat	cytosol	94.1	94.1
Zm00001d041705_P001	Maize	cytosol, mitochondrion	14.75	84.11
Zm00001d005304_P001	Maize	mitochondrion	36.72	82.35
Zm00001d005249_P001	Maize	mitochondrion	37.38	82.31
Zm00001d043169_P001	Maize	cytosol	28.36	81.99
HORVU1Hr1G075150.4	Barley	plasma membrane	86.89	79.82
Os05t0429400-01	Rice	plasma membrane	75.9	79.15
Zm00001d038262_P001	Maize	plasma membrane	73.93	72.74
OQU78068	Sorghum	cytosol	61.48	71.29
TraesCS3D01G378300.1	Wheat	cytosol	68.36	71.04
Zm00001d010205_P002	Maize	cytosol	60.0	67.9
VIT_09s0002g09040.t01	Wine grape	cytosol	12.13	64.91
GSMUA_Achr7P23220_001	Banana	cytosol	51.97	63.4
KRG99105	Soybean	cytosol	14.43	59.46
GSMUA_Achr6P18780_001	Banana	cytosol	55.57	58.45
Bra000675.1-P	Field mustard	cytosol	29.51	58.06
GSMUA_Achr5P25970_001	Banana	cytosol	52.62	57.84
GSMUA_Achr3P22170_001	Banana	cytosol	49.84	57.79
CDX90715	Canola	cytosol	29.18	57.42
VIT_07s0031g03220.t01	Wine grape	cytosol	45.25	52.87
KRH23753	Soybean	cytosol, endoplasmic reticulum, mitochondrion, nucleus	36.72	52.83
CDY58916	Canola	cytosol	11.48	50.72
VIT_18s0041g00430.t01	Wine grape	cytosol	49.84	50.16
PGSC0003DMT400065886	Potato	cytosol	40.33	50.1
Solyc11g027880.1.1	Tomato	cytosol, endoplasmic reticulum, plastid	40.16	50.0
KRH63933	Soybean	plasma membrane	45.57	49.91
GSMUA_Achr11P...	Banana	cytosol, endoplasmic reticulum, plastid	50.98	49.76
KRH54012	Soybean	nucleus	45.41	49.73
KRH59683	Soybean	cytosol	43.61	49.35
VIT_05s0029g01570.t01	Wine grape	cytosol	32.13	48.76
AT1G72160.1	Thale cress	nucleus	38.03	47.35
KRH41016	Soybean	endoplasmic reticulum	44.59	47.3
CDY50441	Canola	plasma membrane	37.54	47.22
CDY03654	Canola	nucleus	37.54	46.83
Bra003891.1-P	Field mustard	cytosol	38.52	46.63
CDX82180	Canola	nucleus	37.38	46.63
PGSC0003DMT400013297	Potato	cytosol	44.1	46.62
Bra008013.1-P	Field mustard	nucleus	37.87	46.57
Solyc06g064940.2.1	Tomato	nucleus	44.1	46.38
Solyc11g051160.1.1	Tomato	extracellular, plastid	44.59	46.18
VIT_18s0041g00420.t01	Wine grape	cytosol	43.93	46.05
CDX68278	Canola	cytosol	32.95	45.79
KRH44929	Soybean	endoplasmic reticulum	43.11	45.66
KRH23751	Soybean	endoplasmic reticulum	44.75	45.05
TraesCS1D01G202700.1	Wheat	plastid	30.82	44.44
CDX68279	Canola	cytosol	36.72	42.18
Bra016084.1-P	Field mustard	cytosol	38.36	41.94
CDX96377	Canola	cytosol	38.2	41.91
CDY03655	Canola	cytosol	38.36	41.42
Bra008012.1-P	Field mustard	cytosol	38.03	41.28
Bra003892.1-P	Field mustard	cytosol	34.92	40.8
AT1G72150.1	Thale cress	cytosol	38.2	40.66
CDY71835	Canola	cytosol	18.85	40.21
CDX82182	Canola	cytosol	37.38	39.65
CDY71842	Canola	cytosol	30.98	39.29
TraesCS7D01G454600.1	Wheat	cytosol	34.43	36.71
AT1G22530.1	Thale cress	cytosol	40.16	35.87
Bra040854.1-P	Field mustard	cytosol	40.33	34.84
CDY21368	Canola	cytosol	37.21	34.82
CDY66581	Canola	cytosol	34.75	33.87
AT4G09160.1	Thale cress	cytosol	35.9	32.78
CDY05051	Canola	nucleus	36.23	31.84

Protein Annotations

Gene3D:3.40.525.10	MapMan:35.1	InterPro:CRAL-TRIO_dom	InterPro:CRAL-TRIO_dom_sf	InterPro:CRAL/TRIO_N_dom	InterPro:CRAL/TRIO_N_dom_sf
ncoils:Coil	InterPro:GOLD_dom	InterPro:GOLD_dom_sf	InterPro:IPR001251	InterPro:IPR009038	InterPro:IPR036865
PFAM:PF00650	PFAM:PF03765	PFscan:PS50191	PFscan:PS50866	PANTHER:PTHR23324	PANTHER:PTHR23324:SF143
SMART:SM00516	SMART:SM01100	SUPFAM:SSF101576	SUPFAM:SSF46938	SUPFAM:SSF52087	EnsemblPlantsGene:TraesCS1D01G268600
EnsemblPlants:TraesCS1D01G268600.1	TIGR:cd00170	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr1D:-:364062589..364065268

Molecular Weight (calculated)

65975.3 Da

IEP (calculated)

4.296

GRAVY (calculated)

-0.468

Length

610 amino acids

Sequence
(BLAST)

001: MAEETKQEAA AAAAVAEVAV TEPEPETKAE DKAVGVGEKA DEAAAAAEAK EEEEEEKKME EAVAEAGADE AAVIEGSTAS FKEESNLVAD LADPEQKALA
101: QLKDLVAAAL AAGEFDLPPP PPPPTPAAEE PAKTDEPAKS DVAAEGEAPK AESSEPKAEE PAKEEPKAEA PAQDDPKAEE PAKEEPKTEA PAAVAVAEEP
201: KAEAPAAVAA ADEPKAEVAA EEAKPEEKTV VVAEEEGTKT VEAIEETAVP AASEPEAAPA AEPKEELIWG VPLVGGDERT DTVLLKFLRA REFKVKEAMA
301: MLKAAVLWRK SFGIDALLGA DLGVPELENV VFYRGADREG HPVCYNVYSE FQDKDLYEKA FGDDEKRERF LKWRIQLLER GIREQLDFSP SGICSMVQVT
401: DLKNSPPMLG KHRAVTRQAL ALLQDNYPEF IAKKVFINVP WWYLAANKMM SPFLTQRTKS KFTFCSPAKT AETLFRYIAP EQVPVQFGGL YKEDDTEFST
501: SDGVTELTVK PSSKETVEIP ATENSTVVWE LRVLGWEVSY GVEFTPDAEG GYTVIVQKTR KVPANEEPIM KGSFKAGEPG KVVLIVNNPT SKKKKLLCRF
601: KVKSSTESSA

Best Arabidopsis Sequence Match ( AT4G09160.1 )
(BLAST)

001: MSQDSATTTP PPPLTSDVSM PSGEEDEPKH VTSEEEAPVT SETNLKLPLM PELEESNHTA EVVSEKVTPE TMTLESEGLN HAAEDSEQTH EVTPETETAK
101: LEVLNHTAED SEQTHEVTPE KETVKSEFLN HVAEDSEQTH EVTPETETVK SEVLNHAAED SEQPRGVTPT PETETSEADT SLLVTSETEE PNHAAEDYSE
201: TEPSQKLMLE QRRKYMEVED WTEPELPDEA VLEAAASVPE PKQPEPQTPP PPPSTTTSTV ASRSLAEMMN REEAEVEEKQ KIQIPRSLGS FKEETNKISD
301: LSETELNALQ ELRHLLQVSQ DSSKTSIWGV PLLKDDRTDV VLLKFLRARD FKPQEAYSML NKTLQWRIDF NIEELLDENL GDDLDKVVFM QGQDKENHPV
401: CYNVYGEFQN KDLYQKTFSD EEKRERFLRW RIQFLEKSIR NLDFVAGGVS TICQVNDLKN SPGPGKTELR LATKQALHLL QDNYPEFVSK QIFINVPWWY
501: LAFYRIISPF MSQRSKSKLV FAGPSRSAET LLKYISPEHV PVQYGGLSVD NCECNSDFTH DDIATEITVK PTTKQTVEII VYEKCTIVWE IRVVGWEVSY
601: GAEFVPENKE GYTVIIQKPR KMTAKNELVV SHSFKVGEVG RILLTVDNPT STKKMLIYRF KVKPLACE

Arabidopsis Description

PATL5Patellin-5 [Source:UniProtKB/Swiss-Prot;Acc:Q9M0R2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.