Factsheet for Solyc11g051160.1.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, extracellular

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

plastid: 20363867
extracellular: 22364583
plastid: 22908117
nucleus: 28394025
extracellular: 29876421

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

msms PMID: 20363867 doi

C Barsan, P Sanchez-Bel, C Rombaldi, I Egea, M Rossignol, M Kuntz, M Zouine, A Latché, M Bouzayen, JC Pech

Université de Toulouse, INP-ENSA Toulouse, Génomique et Biotechnologie des Fruits, Avenue de l'Agrobiopole BP 32607, F-31326 Castanet-Tolosan, France.

msms PMID: 29876421 doi

L Ceballos-Laita, E Gutierrez-Carbonell, D Takahashi, A Abadía, M Uemura, J Abadía, AF López-Millán

Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.

msms PMID: 22364583 doi

P Shah, AL Powell, R Orlando, C Bergmann, G Gutierrez-Sanchez

Complex Carbohydrate Research Center, University of Georgia, Athens, Georgia, United States.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc06g064940.2.1	Tomato	nucleus	71.14	72.24
GSMUA_Achr2P08100_001	Banana	cytosol	43.46	64.48
KRG99105	Soybean	cytosol	16.13	64.19
Zm00001d043169_P001	Maize	cytosol	21.39	59.72
HORVU3Hr1G082150.1	Barley	cytosol	34.47	59.01
Zm00001d041705_P001	Maize	cytosol, mitochondrion	10.7	58.88
Zm00001d005249_P001	Maize	mitochondrion	27.67	58.84
Zm00001d005304_P001	Maize	mitochondrion	26.32	56.99
GSMUA_Achr9P08580_001	Banana	cytosol, plasma membrane	43.46	56.14
GSMUA_Achr7P23220_001	Banana	cytosol	46.18	54.4
KRH23751	Soybean	endoplasmic reticulum	54.67	53.14
VIT_18s0041g00430.t01	Wine grape	cytosol	53.99	52.48
Solyc11g027880.1.1	Tomato	cytosol, endoplasmic reticulum, plastid	43.63	52.45
KRH44929	Soybean	endoplasmic reticulum	51.1	52.26
CDY71835	Canola	cytosol	24.96	51.4
GSMUA_Achr6P18780_001	Banana	cytosol	48.73	49.48
CDX68279	Canola	cytosol	44.48	49.34
CDY58916	Canola	cytosol	11.54	49.28
GSMUA_Achr3P22170_001	Banana	cytosol	43.97	49.24
Bra016084.1-P	Field mustard	cytosol	46.52	49.1
GSMUA_Achr6P07270_001	Banana	cytosol, nucleus, plastid	43.29	49.04
CDX96377	Canola	cytosol	46.18	48.92
Bra008012.1-P	Field mustard	cytosol	46.35	48.58
CDY03655	Canola	cytosol	46.52	48.5
CDY71842	Canola	cytosol	39.56	48.44
Zm00001d012254_P003	Maize	mitochondrion	45.33	48.02
CDX82182	Canola	cytosol	46.35	47.48
KXG33790	Sorghum	cytosol	47.54	47.46
AT1G72150.1	Thale cress	cytosol	46.01	47.29
EES10230	Sorghum	cytosol	41.09	47.27
GSMUA_Achr5P25970_001	Banana	cytosol	44.48	47.21
Os05t0429400-01	Rice	plasma membrane	46.86	47.18
Bra003892.1-P	Field mustard	cytosol	41.77	47.13
Solyc09g015080.2.1	Tomato	cytosol, plastid	33.62	46.7
Zm00001d042664_P001	Maize	plasma membrane	44.82	46.23
TraesCS3B01G417500.1	Wheat	golgi	45.33	46.19
TraesCS3A01G385300.1	Wheat	cytosol	45.33	46.19
Zm00001d038262_P001	Maize	plasma membrane	47.88	45.48
TraesCS3D01G378300.1	Wheat	cytosol	44.99	45.14
TraesCS1B01G279200.1	Wheat	cytosol	46.35	44.75
Os01t0874700-01	Rice	plasma membrane	46.52	44.7
TraesCS1D01G268600.1	Wheat	golgi	46.18	44.59
Solyc02g070210.2.1	Tomato	cytosol	35.31	44.16
OQU78068	Sorghum	cytosol	39.39	44.11
TraesCS1A01G268500.1	Wheat	cytosol	45.67	44.1
GSMUA_Achr11P...	Banana	cytosol, endoplasmic reticulum, plastid	45.84	43.2
Zm00001d010205_P002	Maize	cytosol	39.05	42.67
HORVU3Hr1G082110.2	Barley	plastid	45.33	41.4
AT1G22530.1	Thale cress	cytosol	47.03	40.56
HORVU1Hr1G075150.4	Barley	plasma membrane	45.5	40.36
Bra040854.1-P	Field mustard	cytosol	45.84	38.24
CDY66581	Canola	cytosol	40.58	38.18
CDY21368	Canola	cytosol	41.94	37.88
Solyc09g025230.2.1	Tomato	cytosol	24.11	31.56

Protein Annotations

Gene3D:3.40.525.10	MapMan:35.1	InterPro:CRAL-TRIO_dom	InterPro:CRAL-TRIO_dom_sf	InterPro:CRAL/TRIO_N_dom	InterPro:CRAL/TRIO_N_dom_sf
InterPro:GOLD_dom	InterPro:GOLD_dom_sf	InterPro:IPR001251	InterPro:IPR009038	InterPro:IPR036865	UniProt:K4D8S6
PFAM:PF00650	PFAM:PF03765	PFscan:PS50191	PFscan:PS50866	PANTHER:PTHR23324	PANTHER:PTHR23324:SF96
SMART:SM00516	SMART:SM01100	SUPFAM:SSF101576	SUPFAM:SSF46938	SUPFAM:SSF52087	EnsemblPlantsGene:Solyc11g051160.1
EnsemblPlants:Solyc11g051160.1.1	UniParc:UPI000276AA89	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr11:+:17716423..17718460

Molecular Weight (calculated)

65697.8 Da

IEP (calculated)

4.361

GRAVY (calculated)

-0.575

Length

589 amino acids

Sequence
(BLAST)

001: MAEETKKPAS DETTPPTTVA DVPVPEKEST PQPEPVPVPE TPEKSADPVT EETDKEKTPV TESASFKEES NKVDELPNPE QKALAELKEL VQDALNKHEF
101: TAPPVKEEEK KPEAEAVAIA VAEEEKKEES AAEEPTTDAA PATTEPVKEE PPVPAAVVEE KKETTPVVEE KKEVPPVVEE KKETPASADP SETVEKVTEK
201: VTADEEDGSK AVEEIKETIV EVTATSTAPV EEDAAVPAEE VAATEEEVSI WGIPLLADER SDVILLKFLR ARDFKVKEAF AMLKSVVAWR KEFNIDELLE
301: EDLSGLGLEK VVYNHGVDKE GHPVCYNAFG AFQDNELYQN TFADKEKMDK FLRWRIQFME KSIRNLDFSP DGICTFVQVI DLKNSPGLYL YKKELRQATN
401: RALQLLQDNY PEFVAKQVFI NVPWWYPAYY RMINALFTTR TKSKFVFAGA SRSAETLFKY IVPEQVPVQY GGLSREGEQE FTIADSATED TVKPASKHTV
501: EFPVTEKSNL VWEARVVGWD VCYGAEFVPS AEGGYTIIVE KSRKIAAANE TVITNNYTAP EAGKVVLTFD NQTSKRKKLV YRSKTKSSD

Best Arabidopsis Sequence Match ( AT1G22530.2 )
(BLAST)

001: MAQEEIQKPT ASVPVVKEET PAPVKEVEVP VTTEKAVAAP APEATEEKVV SEVAVPETEV TAVKEEEVAT GKEILQSESF KEEGYLASEL QEAEKNALAE
101: LKELVREALN KREFTAPPPP PAPVKEEKVE EKKTEETEEK KEEVKTEEKS LEAETKEEEK SAAPATVETK KEEILAAPAP IVAETKKEET PVAPAPVETK
201: PAAPVVAETK KEEILPAAPV TTETKEEEKA APGETKKEEK ATASTQVKRA SKFIKDIFVS VTTSEKKKEE EKPAVVTIEK AFAADQEEET KTVEAVEESI
301: VSITLPETAA YVEPEEVSIW GIPLLEDERS DVILLKFLRA RDFKVKEAFT MLKNTVQWRK ENKIDDLVSE DLEGSEFEKL VFTHGVDKQG HVVIYSSYGE
401: FQNKEIFSDK EKLSKFLKWR IQFQEKCVRS LDFSPEAKSS FVFVSDFRNA PGLGQRALWQ FIKRAVKQFE DNYPEFVAKE LFINVPWWYI PYYKTFGSII
501: TSPRTRSKMV LSGPSKSAET IFKYVAPEVV PVKYGGLSKD SPFTVEDGVT EAVVKSTSKY TIDLPATEGS TLSWELRVLG ADVSYGAQFE PSNEASYTVI
601: VSKNRKVGLT DEPVITDSFK ASEAGKVVIT IDNQTFKKKK VLYRSKTQA

Arabidopsis Description

PATL2Patellin-2 [Source:UniProtKB/Swiss-Prot;Acc:Q56ZI2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.