Subcellular Localization
min:
: max
Winner_takes_all: plastid, cytosol
Predictor Summary:
Predictor Summary:
- plastid 4
- mitochondrion 1
- cytosol 3
- nucleus 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400030364 | Potato | plastid | 98.11 | 97.65 |
| KRH76050 | Soybean | cytosol | 81.37 | 81.95 |
| KRH65546 | Soybean | cytosol | 80.9 | 81.47 |
| AT3G51670.1 | Thale cress | cytosol | 75.94 | 78.73 |
| Zm00001d052665_P001 | Maize | cytosol | 37.5 | 78.71 |
| VIT_08s0058g00640.t01 | Wine grape | cytosol, mitochondrion, nucleus | 82.55 | 77.95 |
| CDX78026 | Canola | cytosol, plastid | 75.24 | 77.43 |
| Bra036782.1-P | Field mustard | cytosol, plastid | 75.24 | 77.43 |
| CDX73705 | Canola | cytosol, plastid | 74.76 | 76.94 |
| KRH00348 | Soybean | cytosol | 77.83 | 75.86 |
| CDX78958 | Canola | cytosol, plastid | 49.06 | 75.09 |
| CDY13832 | Canola | cytosol, plastid | 49.06 | 75.09 |
| CDY29572 | Canola | cytosol, plastid | 49.06 | 75.09 |
| CDX73635 | Canola | cytosol, plastid | 49.06 | 75.09 |
| VIT_01s0137g00470.t01 | Wine grape | cytosol | 26.89 | 74.51 |
| CDX90637 | Canola | cytosol | 67.92 | 71.64 |
| GSMUA_Achr5P07450_001 | Banana | plastid | 63.68 | 68.18 |
| GSMUA_Achr9P17890_001 | Banana | cytosol | 62.74 | 67.51 |
| GSMUA_Achr2P18920_001 | Banana | plastid | 66.75 | 67.06 |
| Bra012843.1-P | Field mustard | cytosol | 69.58 | 66.74 |
| GSMUA_Achr3P09950_001 | Banana | plastid | 65.09 | 65.09 |
| EES18028 | Sorghum | plastid | 66.04 | 64.97 |
| Os05t0345175-01 | Rice | cytosol | 12.03 | 64.56 |
| Zm00001d038005_P001 | Maize | mitochondrion, plastid | 64.39 | 63.78 |
| TraesCS1A01G198900.1 | Wheat | plastid | 63.21 | 63.36 |
| TraesCS1B01G213900.1 | Wheat | plastid | 63.21 | 63.36 |
| TraesCS1D01G202700.1 | Wheat | plastid | 63.21 | 63.36 |
| Os05t0345100-00 | Rice | plastid | 43.87 | 59.62 |
| Zm00001d010049_P001 | Maize | plastid | 65.8 | 55.58 |
| CDY29036 | Canola | cytosol, endoplasmic reticulum, mitochondrion, nucleus | 67.92 | 48.32 |
| Solyc02g070210.2.1 | Tomato | cytosol | 45.05 | 40.55 |
| Solyc11g027880.1.1 | Tomato | cytosol, endoplasmic reticulum, plastid | 45.28 | 39.18 |
| Solyc11g051160.1.1 | Tomato | extracellular, plastid | 46.7 | 33.62 |
| Solyc06g064940.2.1 | Tomato | nucleus | 44.34 | 32.41 |
| Solyc09g025230.2.1 | Tomato | cytosol | 33.25 | 31.33 |
| HORVU1Hr1G051510.3 | Barley | plastid | 33.25 | 30.13 |
Protein Annotations
| Gene3D:3.40.525.10 | MapMan:35.1 | InterPro:CRAL-TRIO_dom | InterPro:CRAL-TRIO_dom_sf | InterPro:CRAL/TRIO_N_dom | InterPro:CRAL/TRIO_N_dom_sf |
| GO:GO:0005575 | GO:GO:0005623 | GO:GO:0005886 | GO:GO:0016020 | InterPro:GOLD_dom | InterPro:GOLD_dom_sf |
| InterPro:IPR001251 | InterPro:IPR009038 | InterPro:IPR036865 | UniProt:K4CRY1 | PFAM:PF00650 | PFAM:PF03765 |
| PFscan:PS50191 | PFscan:PS50866 | PANTHER:PTHR23324 | PANTHER:PTHR23324:SF57 | SMART:SM00516 | SMART:SM01100 |
| SUPFAM:SSF101576 | SUPFAM:SSF46938 | SUPFAM:SSF52087 | EnsemblPlantsGene:Solyc09g015080.2 | EnsemblPlants:Solyc09g015080.2.1 | UniParc:UPI000276BD0E |
| SEG:seg | : | : | : | : | : |
Description
Patellin-6 [Source:Projected from Arabidopsis thaliana (AT3G51670) UniProtKB/Swiss-Prot;Acc:Q9SCU1]
Coordinates
chr9:-:7923019..7925704
Molecular Weight (calculated)
47808.2 Da
IEP (calculated)
9.048
GRAVY (calculated)
-0.419
Length
424 amino acids
Sequence
(BLAST)
(BLAST)
001: MDSSSPITVQ KALKSPESAP QSSPKPQSLK KSFVTSLMEA TTLRTPSFKE DSYFTSHLKP SEKKALQELK DKLQSSSSSC SMWGIPLLGG DEKADVILLK
101: FLRARDFKVS DSLHMLEKCL SWRKEFGADT ILEEDFSGFK ELEGVVAYMN GYDRDGHPVC YNAYGVFKDK EMYEKIFGDE EKLKKFLRWR VQVLERGIEQ
201: LHFKPGGINS IIQVTDLKDM PKRELRVASN QILSLFQDNY PEMVARKIFI NVPWYFSVLY SMFSPFLTQR TKSKFVISKE GNVAETLYKF IRPEDIPVQY
301: GGLSRPTDLQ NGPPKPASEF TVKGGEKVNI QIEGIEGGAT ITWDIVVGGW DLEYSAEFVP NGEGSYTIAV EKPRKIAANE EAIHNSFTSK EAGKMVLSVD
401: NTASRKRKVA AYRYIVRKSA TISA
101: FLRARDFKVS DSLHMLEKCL SWRKEFGADT ILEEDFSGFK ELEGVVAYMN GYDRDGHPVC YNAYGVFKDK EMYEKIFGDE EKLKKFLRWR VQVLERGIEQ
201: LHFKPGGINS IIQVTDLKDM PKRELRVASN QILSLFQDNY PEMVARKIFI NVPWYFSVLY SMFSPFLTQR TKSKFVISKE GNVAETLYKF IRPEDIPVQY
301: GGLSRPTDLQ NGPPKPASEF TVKGGEKVNI QIEGIEGGAT ITWDIVVGGW DLEYSAEFVP NGEGSYTIAV EKPRKIAANE EAIHNSFTSK EAGKMVLSVD
401: NTASRKRKVA AYRYIVRKSA TISA
001: MDASLSPFDH QKTQNTEPKK SFITSLITLR SNNIKEDTYF VSELKPTEQK SLQELKEKLS ASSSKASSMW GVSLLGGDDK ADVILLKFLR ARDFKVADSL
101: RMLEKCLEWR EEFKAEKLTE EDLGFKDLEG KVAYMRGYDK EGHPVCYNAY GVFKEKEMYE RVFGDEEKLN KFLRWRVQVL ERGVKMLHFK PGGVNSIIQV
201: TDLKDMPKRE LRVASNQILS LFQDNYPELV ATKIFINVPW YFSVIYSMFS PFLTQRTKSK FVMSKEGNAA ETLYKFIRPE DIPVQYGGLS RPTDSQNGPP
301: KPASEFSIKG GEKVNIQIEG IEGGATITWD IVVGGWDLEY SAEFVPNAEE SYAIVVEKPK KMKATDEAVC NSFTTVEAGK LILSVDNTLS RKKKVAAYRY
401: TVRKSTTTV
101: RMLEKCLEWR EEFKAEKLTE EDLGFKDLEG KVAYMRGYDK EGHPVCYNAY GVFKEKEMYE RVFGDEEKLN KFLRWRVQVL ERGVKMLHFK PGGVNSIIQV
201: TDLKDMPKRE LRVASNQILS LFQDNYPELV ATKIFINVPW YFSVIYSMFS PFLTQRTKSK FVMSKEGNAA ETLYKFIRPE DIPVQYGGLS RPTDSQNGPP
301: KPASEFSIKG GEKVNIQIEG IEGGATITWD IVVGGWDLEY SAEFVPNAEE SYAIVVEKPK KMKATDEAVC NSFTTVEAGK LILSVDNTLS RKKKVAAYRY
401: TVRKSTTTV
Arabidopsis Description
PATL6Patellin-6 [Source:UniProtKB/Swiss-Prot;Acc:Q9SCU1]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.