Factsheet for GSMUA_Achr3P09950_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 2
plastid 3
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	plastid
Plant-mPloc:	cytosol
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr9P17890_001	Banana	cytosol	76.65	82.49
GSMUA_Achr5P07450_001	Banana	plastid	75.71	81.06
GSMUA_Achr2P18920_001	Banana	plastid	78.77	79.15
Zm00001d052665_P001	Maize	cytosol	37.03	77.72
EES18028	Sorghum	plastid	70.99	69.84
Zm00001d038005_P001	Maize	mitochondrion, plastid	69.58	68.93
TraesCS1D01G202700.1	Wheat	plastid	67.22	67.38
TraesCS1A01G198900.1	Wheat	plastid	66.98	67.14
Os05t0345175-01	Rice	cytosol	12.5	67.09
TraesCS1B01G213900.1	Wheat	plastid	66.75	66.9
Solyc09g015080.2.1	Tomato	cytosol, plastid	65.09	65.09
PGSC0003DMT400030364	Potato	plastid	65.09	64.79
KRH65546	Soybean	cytosol	64.15	64.61
KRH76050	Soybean	cytosol	64.15	64.61
Os05t0345100-00	Rice	plastid	47.17	64.1
KRH00348	Soybean	cytosol	65.33	63.68
CDX78026	Canola	cytosol, plastid	61.56	63.35
Bra036782.1-P	Field mustard	cytosol, plastid	61.56	63.35
CDX73705	Canola	cytosol, plastid	61.32	63.11
AT3G51670.1	Thale cress	cytosol	60.61	62.84
CDY29572	Canola	cytosol, plastid	41.04	62.82
CDY13832	Canola	cytosol, plastid	41.04	62.82
CDX78958	Canola	cytosol, plastid	41.04	62.82
CDX73635	Canola	cytosol, plastid	41.04	62.82
VIT_08s0058g00640.t01	Wine grape	cytosol, mitochondrion, nucleus	65.57	61.92
VIT_01s0137g00470.t01	Wine grape	cytosol	22.17	61.44
Zm00001d010049_P001	Maize	plastid	70.28	59.36
CDX90637	Canola	cytosol	55.42	58.46
Bra012843.1-P	Field mustard	cytosol	58.25	55.88
GSMUA_Achr2P08100_001	Banana	cytosol	39.39	42.07
GSMUA_Achr1P05640_001	Banana	cytosol	37.97	38.8
CDY29036	Canola	cytosol, endoplasmic reticulum, mitochondrion, nucleus	54.48	38.76
GSMUA_Achr9P08580_001	Banana	cytosol, plasma membrane	41.51	38.6
GSMUA_Achr7P23220_001	Banana	cytosol	42.92	36.4
HORVU1Hr1G051510.3	Barley	plastid	37.03	33.55
GSMUA_Achr6P07270_001	Banana	cytosol, nucleus, plastid	40.8	33.27
GSMUA_Achr3P22170_001	Banana	cytosol	41.04	33.08
GSMUA_Achr9P30580_001	Banana	cytosol	40.09	31.25
GSMUA_Achr6P18780_001	Banana	cytosol	41.98	30.69
GSMUA_Achr5P25970_001	Banana	cytosol	38.68	29.55
GSMUA_Achr11P...	Banana	cytosol, endoplasmic reticulum, plastid	39.86	27.04

Protein Annotations

Gene3D:3.40.525.10	MapMan:35.1	InterPro:CRAL-TRIO_dom	InterPro:CRAL-TRIO_dom_sf	InterPro:CRAL/TRIO_N_dom	InterPro:CRAL/TRIO_N_dom_sf
InterPro:GOLD_dom	InterPro:GOLD_dom_sf	EnsemblPlantsGene:GSMUA_Achr3G09950_001	EnsemblPlants:GSMUA_Achr3P09950_001	EnsemblPlants:GSMUA_Achr3T09950_001	InterPro:IPR001251
InterPro:IPR009038	InterPro:IPR036865	UniProt:M0SDB2	PFAM:PF00650	PFAM:PF03765	PRINTS:PR00180
PFscan:PS50191	PFscan:PS50866	PANTHER:PTHR23324	PANTHER:PTHR23324:SF57	SMART:SM00516	SMART:SM01100
SUPFAM:SSF101576	SUPFAM:SSF46938	SUPFAM:SSF52087	UniParc:UPI0002960776	:	:

Description

Patellin-6 [Source:GMGC_GENE;Acc:GSMUA_Achr3G09950_001]

Coordinates

chr3:-:7218777..7220250

Molecular Weight (calculated)

47374.7 Da

IEP (calculated)

8.911

GRAVY (calculated)

-0.319

Length

424 amino acids

Sequence
(BLAST)

001: MEASQATSEP VHSSKPATKR SLLSSLMEAT TGATAVSTVP DSSPSFKEDT YLLSTLKSSE QKALRELKQL LSASPTPISM WGVPLASSAP GDDRADVVLL
101: KFLRARDFDA GQAHDMLLRC AEWRREFGAD GVAEEELVGF KELEGVVAYM HGWDRRGHPV CYNAYGVFRD KAVYESVLGN PEKLKRFLRW RIQVMERGVR
201: LLQLRPGGVN SIIQVTDLKD MPKRQLRAAS NHILSLFQDN YPEMVTRKVF VNVPWYFTVM YSMIGPFLTE RTKSKFVIAR EGHVAETLYR FIRPEFVPVQ
301: YGGLSRPGDL QNGPPKPTTE FTIKGGERMS LEIDGIEGGA TITWDMVVGG WDLDYGAEYV PSDAGGYTVV VEKTRRIPAT ADEPIHHVFT AKEAGKMVLS
401: VDNTNSRRRK VAAYRYFVCR SSSS

Best Arabidopsis Sequence Match ( AT3G51670.1 )
(BLAST)

001: MDASLSPFDH QKTQNTEPKK SFITSLITLR SNNIKEDTYF VSELKPTEQK SLQELKEKLS ASSSKASSMW GVSLLGGDDK ADVILLKFLR ARDFKVADSL
101: RMLEKCLEWR EEFKAEKLTE EDLGFKDLEG KVAYMRGYDK EGHPVCYNAY GVFKEKEMYE RVFGDEEKLN KFLRWRVQVL ERGVKMLHFK PGGVNSIIQV
201: TDLKDMPKRE LRVASNQILS LFQDNYPELV ATKIFINVPW YFSVIYSMFS PFLTQRTKSK FVMSKEGNAA ETLYKFIRPE DIPVQYGGLS RPTDSQNGPP
301: KPASEFSIKG GEKVNIQIEG IEGGATITWD IVVGGWDLEY SAEFVPNAEE SYAIVVEKPK KMKATDEAVC NSFTTVEAGK LILSVDNTLS RKKKVAAYRY
401: TVRKSTTTV

Arabidopsis Description

PATL6Patellin-6 [Source:UniProtKB/Swiss-Prot;Acc:Q9SCU1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.