Factsheet for GSMUA_Achr3P22170_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr11P...
GSMUA_Achr5P21440_001
GSMUA_Achr8P09400_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G72160.1	GSMUA_Achr11P...	AT3G54220.1	19228333
AT1G72160.1	GSMUA_Achr5P21440_001	AT3G54220.1	19228333
AT1G72160.1	GSMUA_Achr8P09400_001	AT3G54220.1	19228333

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr7P23220_001	Banana	cytosol	67.3	70.8
HORVU3Hr1G082150.1	Barley	cytosol	46.01	70.35
VIT_09s0002g09040.t01	Wine grape	cytosol	15.02	69.3
GSMUA_Achr5P25970_001	Banana	cytosol	71.86	68.11
GSMUA_Achr2P08100_001	Banana	cytosol	50.57	67.0
KRG99105	Soybean	cytosol	18.06	64.19
GSMUA_Achr9P08580_001	Banana	cytosol, plasma membrane	55.51	64.04
GSMUA_Achr6P18780_001	Banana	cytosol	70.53	63.97
Zm00001d005249_P001	Maize	mitochondrion	33.46	63.54
Zm00001d041705_P001	Maize	cytosol, mitochondrion	12.74	62.62
Zm00001d043169_P001	Maize	cytosol	25.1	62.56
Zm00001d005304_P001	Maize	mitochondrion	32.13	62.13
Bra000675.1-P	Field mustard	cytosol	34.6	58.71
CDX90715	Canola	cytosol	34.41	58.39
GSMUA_Achr11P...	Banana	cytosol, endoplasmic reticulum, plastid	69.2	58.24
GSMUA_Achr6P07270_001	Banana	cytosol, nucleus, plastid	55.32	55.96
Zm00001d012254_P003	Maize	mitochondrion	57.6	54.5
Zm00001d042664_P001	Maize	plasma membrane	58.56	53.94
EES10230	Sorghum	cytosol	52.28	53.71
TraesCS3A01G385300.1	Wheat	cytosol	58.94	53.63
KRH23753	Soybean	cytosol, endoplasmic reticulum, mitochondrion, nucleus	43.16	53.54
TraesCS3B01G417500.1	Wheat	golgi	58.75	53.46
CDY58916	Canola	cytosol	13.88	52.9
TraesCS3D01G378300.1	Wheat	cytosol	58.94	52.81
KXG33790	Sorghum	cytosol	59.13	52.71
VIT_07s0031g03220.t01	Wine grape	cytosol	51.9	52.3
PGSC0003DMT400065886	Potato	cytosol	48.1	51.53
Solyc11g027880.1.1	Tomato	cytosol, endoplasmic reticulum, plastid	47.72	51.22
Os01t0874700-01	Rice	plasma membrane	59.7	51.22
CDY50441	Canola	plasma membrane	46.2	50.1
CDX82180	Canola	nucleus	46.39	49.9
TraesCS1D01G268600.1	Wheat	golgi	57.79	49.84
Os05t0429400-01	Rice	plasma membrane	55.32	49.74
CDY03654	Canola	nucleus	46.2	49.69
TraesCS1B01G279200.1	Wheat	cytosol	57.6	49.67
AT1G72160.1	Thale cress	nucleus	46.2	49.59
Bra008013.1-P	Field mustard	nucleus	46.39	49.19
KRH63933	Soybean	plasma membrane	52.09	49.19
TraesCS1A01G268500.1	Wheat	cytosol	57.03	49.18
KRH59683	Soybean	cytosol	50.0	48.79
KRH54012	Soybean	nucleus	51.52	48.65
Bra003891.1-P	Field mustard	cytosol	46.39	48.41
HORVU3Hr1G082110.2	Barley	plastid	58.94	48.06
OQU78068	Sorghum	cytosol	47.91	47.91
Zm00001d038262_P001	Maize	plasma membrane	56.46	47.9
CDX68278	Canola	cytosol	39.92	47.84
KRH41016	Soybean	endoplasmic reticulum	50.38	46.09
KRH44929	Soybean	endoplasmic reticulum	50.19	45.83
VIT_05s0029g01570.t01	Wine grape	cytosol	34.98	45.77
VIT_18s0041g00430.t01	Wine grape	cytosol	52.66	45.71
PGSC0003DMT400013297	Potato	cytosol	49.24	44.89
HORVU1Hr1G075150.4	Barley	plasma membrane	56.65	44.88
Solyc06g064940.2.1	Tomato	nucleus	49.43	44.83
KRH23751	Soybean	endoplasmic reticulum	51.33	44.55
VIT_18s0041g00420.t01	Wine grape	cytosol	48.86	44.16
Solyc11g051160.1.1	Tomato	extracellular, plastid	49.24	43.97
CDY71835	Canola	cytosol	23.38	43.01
Zm00001d010205_P002	Maize	cytosol	43.92	42.86
GSMUA_Achr2P18920_001	Banana	plastid	34.22	42.65
GSMUA_Achr5P07450_001	Banana	plastid	31.75	42.17
GSMUA_Achr9P17890_001	Banana	cytosol	31.18	41.62
GSMUA_Achr3P09950_001	Banana	plastid	33.08	41.04
GSMUA_Achr1P05640_001	Banana	cytosol	31.56	40.0
Bra016084.1-P	Field mustard	cytosol	42.21	39.78
CDX96377	Canola	cytosol	42.02	39.75
AT1G72150.1	Thale cress	cytosol	43.16	39.62
Bra008012.1-P	Field mustard	cytosol	42.02	39.32
CDX68279	Canola	cytosol	39.54	39.17
CDY03655	Canola	cytosol	42.02	39.12
CDX82182	Canola	cytosol	41.83	38.26
GSMUA_Achr9P30580_001	Banana	cytosol	39.35	38.05
Bra003892.1-P	Field mustard	cytosol	37.07	37.36
CDY71842	Canola	cytosol	33.46	36.59
AT4G09160.1	Thale cress	cytosol	44.49	35.03
CDY05051	Canola	nucleus	44.49	33.72
AT1G22530.1	Thale cress	cytosol	43.54	33.53
CDY21368	Canola	cytosol	38.4	30.98
Bra040854.1-P	Field mustard	cytosol	41.44	30.88
CDY66581	Canola	cytosol	35.36	29.71

Protein Annotations

Gene3D:3.40.525.10	MapMan:35.1	InterPro:CRAL-TRIO_dom	InterPro:CRAL-TRIO_dom_sf	InterPro:CRAL/TRIO_N_dom	InterPro:CRAL/TRIO_N_dom_sf
ncoils:Coil	InterPro:GOLD_dom	EnsemblPlantsGene:GSMUA_Achr3G22170_001	EnsemblPlants:GSMUA_Achr3P22170_001	EnsemblPlants:GSMUA_Achr3T22170_001	InterPro:IPR001251
InterPro:IPR009038	InterPro:IPR036865	UniProt:M0SGT3	PFAM:PF00650	PFAM:PF03765	PFscan:PS50191
PFscan:PS50866	PANTHER:PTHR23324	PANTHER:PTHR23324:SF143	SMART:SM00516	SMART:SM01100	SUPFAM:SSF46938
SUPFAM:SSF52087	UniParc:UPI000295D634	SEG:seg	:	:	:

Description

Hypothetical protein [Source:GMGC_GENE;Acc:GSMUA_Achr3G22170_001]

Coordinates

chr3:-:23071042..23073027

Molecular Weight (calculated)

58074.0 Da

IEP (calculated)

4.959

GRAVY (calculated)

-0.449

Length

526 amino acids

Sequence
(BLAST)

001: MTEETQPMAT EAEPTATEEL KKAGAEEKKT ETDEVAPPAT AEPKKVETEE KKTEAEEVAP PADAAAATTV PQSASFKEES NVVADLVDRQ KKALDELKQL
101: VQAALANNEF SPPPPAAAPA APADVQPPVE KDEKEGKPAE EPAAPVKEEA LPPPLPASAG DEDGAKAAAK EPSAEALATA PVAHPEEVFI WGVPLVGDEK
201: SDTVLLKFLR ARDFKVKDAL AMLKDAVIWR KQFGIEALLE EDLGLPELDK VVYTHGVDKE RHPVCYNIYG EFHNKQLYEK VFGDAEKRQR FLKWRIQYLE
301: KGIRERLDFT PGGISSMVQV TDLKNSPRLG KHRQVTKQAV TLLQNNYPEF IAKKVFINVP WWYLAVSRMM SPFFTQRTTS KFVFAGPSKS AETLFKYIAP
401: EQVPVAFGGL SRDNDPDFTS AEAVVDITIG PSSKESIEIP ATETCLLVWE LRVLGWEVGY GAEFRPNAEN GYTVIVQKTR KLVADDEPVI RSSFKISEPG
501: KVVLDIGNLT SKKKKLLYRY KVKSST

Best Arabidopsis Sequence Match ( AT1G22530.1 )
(BLAST)

001: MAQEEIQKPT ASVPVVKEET PAPVKEVEVP VTTEKAVAAP APEATEEKVV SEVAVPETEV TAVKEEEVAT GKEILQSESF KEEGYLASEL QEAEKNALAE
101: LKELVREALN KREFTAPPPP PAPVKEEKVE EKKTEETEEK KEEVKTEEKS LEAETKEEEK SAAPATVETK KEEILAAPAP IVAETKKEET PVAPAPVETK
201: PAAPVVAETK KEEILPAAPV TTETKVEEKV VPVETTPAAP VTTETKEEEK AAPVTTETKE EEKAAPGETK KEEKATASTQ VKRASKFIKD IFVSVTTSEK
301: KKEEEKPAVV TIEKAFAADQ EEETKTVEAV EESIVSITLP ETAAYVEPEE VSIWGIPLLE DERSDVILLK FLRARDFKVK EAFTMLKNTV QWRKENKIDD
401: LVSEDLEGSE FEKLVFTHGV DKQGHVVIYS SYGEFQNKEI FSDKEKLSKF LKWRIQFQEK CVRSLDFSPE AKSSFVFVSD FRNAPGLGQR ALWQFIKRAV
501: KQFEDNYPEF VAKELFINVP WWYIPYYKTF GSIITSPRTR SKMVLSGPSK SAETIFKYVA PEVVPVKYGG LSKDSPFTVE DGVTEAVVKS TSKYTIDLPA
601: TEGSTLSWEL RVLGADVSYG AQFEPSNEAS YTVIVSKNRK VGLTDEPVIT DSFKASEAGK VVITIDNQTF KKKKVLYRSK TQA

Arabidopsis Description

PATL2Patellin-2 [Source:UniProtKB/Swiss-Prot;Acc:Q56ZI2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.