Factsheet for GSMUA_Achr5P25970_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr11P...
GSMUA_Achr5P21440_001
GSMUA_Achr8P09400_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G72160.1	GSMUA_Achr11P...	AT3G54220.1	19228333
AT1G72160.1	GSMUA_Achr5P21440_001	AT3G54220.1	19228333
AT1G72160.1	GSMUA_Achr8P09400_001	AT3G54220.1	19228333

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU3Hr1G082150.1	Barley	cytosol	44.86	72.38
GSMUA_Achr2P08100_001	Banana	cytosol	51.71	72.29
GSMUA_Achr7P23220_001	Banana	cytosol	65.05	72.2
GSMUA_Achr3P22170_001	Banana	cytosol	68.11	71.86
VIT_09s0002g09040.t01	Wine grape	cytosol	14.59	71.05
GSMUA_Achr6P18780_001	Banana	cytosol	71.53	68.45
Zm00001d041705_P001	Maize	cytosol, mitochondrion	12.97	67.29
Zm00001d005249_P001	Maize	mitochondrion	33.51	67.15
GSMUA_Achr9P08580_001	Banana	cytosol, plasma membrane	54.59	66.45
KRG99105	Soybean	cytosol	17.66	66.22
Zm00001d005304_P001	Maize	mitochondrion	32.25	65.81
Zm00001d043169_P001	Maize	cytosol	24.68	64.93
GSMUA_Achr11P...	Banana	cytosol, endoplasmic reticulum, plastid	70.09	62.24
Bra000675.1-P	Field mustard	cytosol	33.87	60.65
CDX90715	Canola	cytosol	33.69	60.32
CDY58916	Canola	cytosol	14.41	57.97
Zm00001d012254_P003	Maize	mitochondrion	56.94	56.83
GSMUA_Achr6P07270_001	Banana	cytosol, nucleus, plastid	53.15	56.73
Zm00001d042664_P001	Maize	plasma membrane	57.48	55.87
KXG33790	Sorghum	cytosol	58.92	55.42
TraesCS3B01G417500.1	Wheat	golgi	57.3	55.02
TraesCS3A01G385300.1	Wheat	cytosol	57.3	55.02
VIT_07s0031g03220.t01	Wine grape	cytosol	51.71	54.98
KRH23753	Soybean	cytosol, endoplasmic reticulum, mitochondrion, nucleus	41.62	54.48
TraesCS3D01G378300.1	Wheat	cytosol	57.3	54.17
Os05t0429400-01	Rice	plasma membrane	56.94	54.02
EES10230	Sorghum	cytosol	49.55	53.71
OQU78068	Sorghum	cytosol	50.45	53.23
Os01t0874700-01	Rice	plasma membrane	58.56	53.02
TraesCS1B01G279200.1	Wheat	cytosol	57.84	52.62
TraesCS1D01G268600.1	Wheat	golgi	57.84	52.62
TraesCS1A01G268500.1	Wheat	cytosol	57.12	51.97
Zm00001d038262_P001	Maize	plasma membrane	57.66	51.61
KRH59683	Soybean	cytosol	49.19	50.65
CDY50441	Canola	plasma membrane	44.14	50.52
CDX82180	Canola	nucleus	44.14	50.1
CDY03654	Canola	nucleus	44.14	50.1
KRH63933	Soybean	plasma membrane	50.09	49.91
KRH54012	Soybean	nucleus	50.09	49.91
HORVU3Hr1G082110.2	Barley	plastid	57.66	49.61
Bra008013.1-P	Field mustard	nucleus	44.32	49.6
AT1G72160.1	Thale cress	nucleus	43.6	49.39
PGSC0003DMT400065886	Potato	cytosol	43.6	49.29
Solyc11g027880.1.1	Tomato	cytosol, endoplasmic reticulum, plastid	43.24	48.98
Bra003891.1-P	Field mustard	cytosol	44.32	48.81
CDX68278	Canola	cytosol	38.56	48.75
KRH41016	Soybean	endoplasmic reticulum	49.91	48.17
HORVU1Hr1G075150.4	Barley	plasma membrane	56.58	47.29
VIT_18s0041g00430.t01	Wine grape	cytosol	51.17	46.86
Zm00001d010205_P002	Maize	cytosol	45.23	46.57
VIT_05s0029g01570.t01	Wine grape	cytosol	33.69	46.52
PGSC0003DMT400013297	Potato	cytosol	47.93	46.1
Solyc06g064940.2.1	Tomato	nucleus	47.75	45.69
KRH44929	Soybean	endoplasmic reticulum	47.21	45.49
Solyc11g051160.1.1	Tomato	extracellular, plastid	47.21	44.48
KRH23751	Soybean	endoplasmic reticulum	48.11	44.06
VIT_18s0041g00420.t01	Wine grape	cytosol	46.13	43.99
CDY71835	Canola	cytosol	22.52	43.71
CDX68279	Canola	cytosol	41.8	43.69
CDX96377	Canola	cytosol	42.88	42.81
Bra016084.1-P	Field mustard	cytosol	42.88	42.65
Bra008012.1-P	Field mustard	cytosol	42.7	42.17
Bra003892.1-P	Field mustard	cytosol	39.64	42.15
CDY03655	Canola	cytosol	42.7	41.95
AT1G72150.1	Thale cress	cytosol	42.7	41.36
CDX82182	Canola	cytosol	42.7	41.22
GSMUA_Achr2P18920_001	Banana	plastid	30.63	40.28
CDY71842	Canola	cytosol	34.59	39.92
GSMUA_Achr9P17890_001	Banana	cytosol	28.11	39.59
GSMUA_Achr5P07450_001	Banana	plastid	27.93	39.14
GSMUA_Achr3P09950_001	Banana	plastid	29.55	38.68
GSMUA_Achr1P05640_001	Banana	cytosol	28.47	38.07
GSMUA_Achr9P30580_001	Banana	cytosol	36.4	37.13
AT1G22530.1	Thale cress	cytosol	43.42	35.29
CDY21368	Canola	cytosol	40.9	34.82
Bra040854.1-P	Field mustard	cytosol	43.78	34.42
CDY66581	Canola	cytosol	38.02	33.71
AT4G09160.1	Thale cress	cytosol	39.82	33.08
CDY05051	Canola	nucleus	40.18	32.13

Protein Annotations

Gene3D:3.40.525.10	MapMan:35.1	InterPro:CRAL-TRIO_dom	InterPro:CRAL-TRIO_dom_sf	InterPro:CRAL/TRIO_N_dom	InterPro:CRAL/TRIO_N_dom_sf
InterPro:GOLD_dom	EnsemblPlantsGene:GSMUA_Achr5G25970_001	EnsemblPlants:GSMUA_Achr5P25970_001	EnsemblPlants:GSMUA_Achr5T25970_001	InterPro:IPR001251	InterPro:IPR009038
InterPro:IPR036865	UniProt:M0T1S2	PFAM:PF00650	PFAM:PF03765	PFscan:PS50191	PFscan:PS50866
PANTHER:PTHR23324	PANTHER:PTHR23324:SF143	SMART:SM00516	SMART:SM01100	SUPFAM:SSF46938	SUPFAM:SSF52087
UniParc:UPI00029683B9	SEG:seg	:	:	:	:

Description

Putative Patellin-3 [Source:GMGC_GENE;Acc:GSMUA_Achr5G25970_001]

Coordinates

chr5:-:26930694..26932904

Molecular Weight (calculated)

60657.7 Da

IEP (calculated)

4.694

GRAVY (calculated)

-0.485

Length

555 amino acids

Sequence
(BLAST)

001: MAEETETKAP EGPPAAEVVV AEAEEKKPEA EEAVPPADEA AATVPESTFL EEESNVVAEP VDPQKKALDE LKQLVQAALS NNEFNPPPPP PAPAKEEPPV
101: KEEEEEAKPA EAPAPASVEE SKPPSEPVSA QEAKPAEAPA PASEHASPVK KEPLPPPSQP AEEKAATADD ATAKTVKAIK EAVGSAAAED VSPAAKEAPA
201: EVPAPASTAP PEEVFIWRVP LVGDEKSDAV LLKFLRARDF KVKDALAMLK DAVIWRKQIG IEALLEEDLG LPELDKVVYM HGNDKEGHPV CYNVYGEFQN
301: KELYEKAFGD ADKRRKFLKW RIQYLEKGIR EHLDFTPGGI SSMVQVTDLR NSPRLGKHRQ VTKQAVTLLQ DNYPEFISKK VFINVPWWYL AVNRMMSPFF
401: TQRTKSKFVF AGPSKSAETL FKYIAPEQVP VAFGGLSKEK DPDFSTADVV TDVSIKPSSK QTIEIPATET CLIVWELRVL GCEVSYGAEF TPSAEDGYTV
501: IVQKNRKLAA DDEPVIKGSF KNGEPGKVVL NVENLTSKKK LLLYRYKVKS STGST

Best Arabidopsis Sequence Match ( AT1G22530.2 )
(BLAST)

001: MAQEEIQKPT ASVPVVKEET PAPVKEVEVP VTTEKAVAAP APEATEEKVV SEVAVPETEV TAVKEEEVAT GKEILQSESF KEEGYLASEL QEAEKNALAE
101: LKELVREALN KREFTAPPPP PAPVKEEKVE EKKTEETEEK KEEVKTEEKS LEAETKEEEK SAAPATVETK KEEILAAPAP IVAETKKEET PVAPAPVETK
201: PAAPVVAETK KEEILPAAPV TTETKEEEKA APGETKKEEK ATASTQVKRA SKFIKDIFVS VTTSEKKKEE EKPAVVTIEK AFAADQEEET KTVEAVEESI
301: VSITLPETAA YVEPEEVSIW GIPLLEDERS DVILLKFLRA RDFKVKEAFT MLKNTVQWRK ENKIDDLVSE DLEGSEFEKL VFTHGVDKQG HVVIYSSYGE
401: FQNKEIFSDK EKLSKFLKWR IQFQEKCVRS LDFSPEAKSS FVFVSDFRNA PGLGQRALWQ FIKRAVKQFE DNYPEFVAKE LFINVPWWYI PYYKTFGSII
501: TSPRTRSKMV LSGPSKSAET IFKYVAPEVV PVKYGGLSKD SPFTVEDGVT EAVVKSTSKY TIDLPATEGS TLSWELRVLG ADVSYGAQFE PSNEASYTVI
601: VSKNRKVGLT DEPVITDSFK ASEAGKVVIT IDNQTFKKKK VLYRSKTQA

Arabidopsis Description

PATL2Patellin-2 [Source:UniProtKB/Swiss-Prot;Acc:Q56ZI2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.