Factsheet for VIT_19s0085g00280.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_09s0002g09040.t01	Wine grape	cytosol	12.77	63.16
VIT_10s0003g05480.t01	Wine grape	cytosol	49.47	58.61
GSMUA_Achr9P30580_001	Banana	cytosol	46.63	48.35
EER88801	Sorghum	cytosol	43.26	46.74
Zm00001d046995_P001	Maize	plasma membrane	42.73	45.56
VIT_07s0005g03430.t01	Wine grape	cytosol	36.17	45.43
HORVU7Hr1G107070.1	Barley	cytosol	42.2	43.99
TraesCS7A01G466800.1	Wheat	cytosol	42.38	43.06
Os06t0671800-01	Rice	endoplasmic reticulum, extracellular, golgi, nucleus, peroxisome, plasma membrane, plastid, vacuole	27.66	42.98
TraesCS7B01G368100.1	Wheat	nucleus	42.91	42.76
TraesCS7D01G454600.1	Wheat	cytosol	42.38	41.78
VIT_08s0058g00640.t01	Wine grape	cytosol, mitochondrion, nucleus	32.45	40.76
VIT_01s0137g00470.t01	Wine grape	cytosol	10.82	39.87
VIT_07s0031g03220.t01	Wine grape	cytosol	36.88	39.85
VIT_05s0029g01570.t01	Wine grape	cytosol	27.84	39.05
VIT_18s0041g00430.t01	Wine grape	cytosol	39.89	37.13
VIT_18s0041g00420.t01	Wine grape	cytosol	36.52	35.4

Protein Annotations

EntrezGene:100247845	wikigene:100247845	Gene3D:3.40.525.10	MapMan:35.1	EMBL:AM463399	ProteinID:CAN63609
ProteinID:CAN63609.1	ProteinID:CCB49010	ProteinID:CCB49010.1	InterPro:CRAL-TRIO_dom	InterPro:CRAL-TRIO_dom_sf	InterPro:CRAL/TRIO_N_dom
InterPro:CRAL/TRIO_N_dom_sf	ncoils:Coil	UniProt:F6H9W7	EMBL:FN595503	InterPro:IPR001251	InterPro:IPR036865
EntrezGene:LOC100247845	wikigene:LOC100247845	PFAM:PF00650	PFAM:PF03765	PRINTS:PR00180	PFscan:PS50191
PANTHER:PTHR23324	PANTHER:PTHR23324:SF48	SMART:SM00516	SMART:SM01100	SUPFAM:SSF46938	SUPFAM:SSF52087
UniParc:UPI00015CC364	ArrayExpress:VIT_19s0085g00280	EnsemblPlantsGene:VIT_19s0085g00280	EnsemblPlants:VIT_19s0085g00280.t01	RefSeq:XP_002263951	RefSeq:XP_002263951.1
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr19:+:22654525..22657736

Molecular Weight (calculated)

63866.2 Da

IEP (calculated)

4.684

GRAVY (calculated)

-0.745

Length

564 amino acids

Sequence
(BLAST)

001: MAEEAIPKEI QVAKDEVPQK QEPSKKDVEV EGAATGDVKD AEKDGDSKKF NDPKPGLAAL IDDEKENEGV SKDSVVDSLV AERGASFQEE SNLPSDLKDL
101: EKKALLDLRS KIEDAIRSNT LFEEEKKQAE EAEKARSPEK EGEEKEKSVV NEGQGEEKKP EELAVEEGKE EEKPENLGFN GEKNETKQKE EEQEKINIEI
201: GKKAIEVDEE IKLWGVPLLP SKGDKGTDVI LLKFLRAREF KVQEAFEMLR NTLKWIKDNN IDIILEEEFP PELSSVAYMQ GMDRKGHPIC YNIFGTFLND
301: EIYNKTFGTE ELRHKFLRWR FQLMERGIKK LDFGSGGATS MLQVNDLRNS PGPTKKELRQ AMKQAVGLLQ DNYPEFVSRN IFINVPFWSY AFYAVVSPFF
401: TQRSKNKFDF ARPARVTETL LKYIDAQQIP VGYGGFHREN DPDFSIEDGV SEVIIKGGSS GAIAIPAPEV GTKFTWEITV LGWDVNYREE FVPKDEGSYT
501: MIVQKERKVG WEEGAIRNSF TNKEAGMLVL TIDNATFKKK RVLYRYKPNS TSTTTTTPSS STTT

Best Arabidopsis Sequence Match ( AT1G30690.2 )
(BLAST)

001: MTAEVKVEEK QVESEVVIAP AVVPEETTVK AVVEETKVEE DESKPEGVEK SASFKEESDF FADLKESEKK ALSDLKSKLE EAIVDNTLLK TKKKESSPMK
101: EKKEEVVKPE AEVEKKKEEA AEEKVEEEKK SEAVVTEEAP KAETVEAVVT EEIIPKEEVT TVVEKVEEET KEEEKKTEDV VTEEVKAETI EVEDEDESVD
201: KDIELWGVPL LPSKGAESTD VILLKFLRAR DFKVNEAFEM LKKTLKWRKQ NKIDSILGEE FGEDLATAAY MNGVDRESHP VCYNVHSEEL YQTIGSEKNR
301: EKFLRWRFQL MEKGIQKLNL KPGGVTSLLQ IHDLKNAPGV SRTEIWVGIK KVIETLQDNY PEFVSRNIFI NVPFWFYAMR AVLSPFLTQR TKSKFVVARP
401: AKVRETLLKY IPADELPVQY GGFKTVDDTE FSNETVSEVV VKPGSSETIE IPAPETEGTL VWDIAVLGWE VNYKEEFVPT EEGAYTVIVQ KVKKMGANEG
501: PIRNSFKNSQ AGKIVLTVDN VSGKKKKVLY RYRTKTESSS

Arabidopsis Description

PATL4Patellin-4 [Source:UniProtKB/Swiss-Prot;Acc:Q94C59]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.