Factsheet for VIT_07s0005g03430.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
mitochondrion 1
cytoskeleton 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytoskeleton, cytosol, mitochondrion
BaCelLo:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytoskeleton
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_09s0002g09040.t01	Wine grape	cytosol	13.36	52.63
GSMUA_Achr1P05640_001	Banana	cytosol	47.44	51.33
VIT_10s0003g05480.t01	Wine grape	cytosol	50.33	47.48
KRH32187	Soybean	cytosol	49.22	46.82
KRH19560	Soybean	cytosol	48.55	46.38
PGSC0003DMT400026646	Potato	cytosol	43.65	44.04
Solyc09g025230.2.1	Tomato	cytosol	43.21	43.11
VIT_01s0137g00470.t01	Wine grape	cytosol	13.36	39.22
VIT_08s0058g00640.t01	Wine grape	cytosol, mitochondrion, nucleus	38.08	38.08
VIT_19s0085g00280.t01	Wine grape	cytosol	45.43	36.17
VIT_07s0031g03220.t01	Wine grape	cytosol	41.2	35.44
VIT_05s0029g01570.t01	Wine grape	cytosol	29.84	33.33
VIT_18s0041g00420.t01	Wine grape	cytosol	40.98	31.62
VIT_18s0041g00430.t01	Wine grape	cytosol	40.53	30.03

Protein Annotations

EntrezGene:100258306	wikigene:100258306	Gene3D:3.40.525.10	MapMan:35.1	ProteinID:CBI37122	ProteinID:CBI37122.3
InterPro:CRAL-TRIO_dom	InterPro:CRAL-TRIO_dom_sf	InterPro:CRAL/TRIO_N_dom	InterPro:CRAL/TRIO_N_dom_sf	UniProt:D7U305	EMBL:FN596502
InterPro:GOLD_dom	InterPro:IPR001251	InterPro:IPR009038	InterPro:IPR036865	EntrezGene:LOC100258306	wikigene:LOC100258306
PFAM:PF00650	PFAM:PF03765	PRINTS:PR00180	PFscan:PS50191	PFscan:PS50866	PANTHER:PTHR23324
PANTHER:PTHR23324:SF82	SMART:SM00516	SMART:SM01100	SUPFAM:SSF46938	SUPFAM:SSF52087	UniParc:UPI00019839D2
ArrayExpress:VIT_07s0005g03430	EnsemblPlantsGene:VIT_07s0005g03430	EnsemblPlants:VIT_07s0005g03430.t01	RefSeq:XP_002273072	RefSeq:XP_002273072.1	SEG:seg

Description

No Description!

Coordinates

chr7:-:6288459..6290115

Molecular Weight (calculated)

51817.4 Da

IEP (calculated)

8.179

GRAVY (calculated)

-0.525

Length

449 amino acids

Sequence
(BLAST)

001: MAECSQISDE TNENENTHKH QEIHLEDAES MNPDDESNSH TEMKKPMSPE QEYKASIQMK KSKKKALLEL RCRVEDAIIG NYMLGKPRGK VPESKKTQEN
101: LHDISLWGVP LLPSKGHEGT DIILLKFLKA RDFKVSEAFN MLRRTLIWRR EFKTEGILEE NFGPELENVV YINSTDKEGH PLCYNVCGAF KDRDFYKKTF
201: GSEAKCEEFL RWRVQSMEKV IQNLNFTAGG VDSMVQILDL KNSPRPSNKE LRLVTKKAIT LLQDNYPELI FRHIVINVPF WYYASHTLIS KFISQRTKSK
301: FILARPSGVA DTLLKFIAPE NLPVQYGGLK RENDIEFSPA DKALELIVKA GTIESIEIPA TEAGVTVVWD MTIVGWDVNY KEEFIPEDEG SYKILLEKDK
401: KMGQSMRNSF YISEPGKIVI TIENGTYKRK RVLYRFRSKP TVPMYVYFK

Best Arabidopsis Sequence Match ( AT1G30690.2 )
(BLAST)

001: MTAEVKVEEK QVESEVVIAP AVVPEETTVK AVVEETKVEE DESKPEGVEK SASFKEESDF FADLKESEKK ALSDLKSKLE EAIVDNTLLK TKKKESSPMK
101: EKKEEVVKPE AEVEKKKEEA AEEKVEEEKK SEAVVTEEAP KAETVEAVVT EEIIPKEEVT TVVEKVEEET KEEEKKTEDV VTEEVKAETI EVEDEDESVD
201: KDIELWGVPL LPSKGAESTD VILLKFLRAR DFKVNEAFEM LKKTLKWRKQ NKIDSILGEE FGEDLATAAY MNGVDRESHP VCYNVHSEEL YQTIGSEKNR
301: EKFLRWRFQL MEKGIQKLNL KPGGVTSLLQ IHDLKNAPGV SRTEIWVGIK KVIETLQDNY PEFVSRNIFI NVPFWFYAMR AVLSPFLTQR TKSKFVVARP
401: AKVRETLLKY IPADELPVQY GGFKTVDDTE FSNETVSEVV VKPGSSETIE IPAPETEGTL VWDIAVLGWE VNYKEEFVPT EEGAYTVIVQ KVKKMGANEG
501: PIRNSFKNSQ AGKIVLTVDN VSGKKKKVLY RYRTKTESSS

Arabidopsis Description

PATL4Patellin-4 [Source:UniProtKB/Swiss-Prot;Acc:Q94C59]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.