CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome

Predictor Summary:

cytosol 1
peroxisome 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	peroxisome
Any Predictor:	cytosol, peroxisome
BaCelLo:	cytosol
MultiLoc:	peroxisome
PProwler:	peroxisome
WoLF PSORT:	peroxisome
YLoc:	peroxisome

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY68004	Canola	cytosol	39.77	63.25
CDY46358	Canola	peroxisome	79.92	56.27
CDX67740	Canola	cytoskeleton, cytosol, peroxisome	86.36	53.52
AT1G54340.1	Thale cress	peroxisome	79.17	50.24
KRH43614	Soybean	peroxisome	71.59	48.46
GSMUA_Achr4P00910_001	Banana	cytosol	72.35	46.59
GSMUA_Achr7P14090_001	Banana	peroxisome	70.83	45.17
VIT_19s0085g01150.t01	Wine grape	peroxisome	70.83	44.95
KRH13828	Soybean	nucleus, peroxisome	70.83	44.95
CDY60868	Canola	cytosol	70.08	44.9
CDY16428	Canola	cytosol	70.08	44.9
CDY07472	Canola	cytosol	70.08	44.9
GSMUA_Achr1P05110_001	Banana	cytosol	69.7	44.88
CDY20354	Canola	cytosol	70.45	44.39
CDY39261	Canola	cytosol	69.32	44.31
TraesCS3A01G166600.1	Wheat	golgi, peroxisome	69.32	44.2
TraesCS3D01G175100.1	Wheat	peroxisome	69.32	44.2
TraesCS3B01G199500.1	Wheat	peroxisome	68.94	43.96
HORVU3Hr1G033920.10	Barley	peroxisome	68.94	43.86
Os01t0248400-01	Rice	plasma membrane	67.05	42.75
CDY68003	Canola	endoplasmic reticulum	27.65	38.42
CDX70573	Canola	mitochondrion, plastid	61.36	33.54
CDX78585	Canola	mitochondrion, plastid	61.36	33.4

Protein Annotations

KEGG:00020+1.1.1.42	KEGG:00480+1.1.1.42	KEGG:00720+1.1.1.42	Gene3D:3.40.718.10	MapMan:50.1.1	GO:A0A078EBW9
EnsemblPlants:CDX98289	ProteinID:CDX98289	ProteinID:CDX98289.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0004450
GO:GO:0006102	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016616	GO:GO:0055114
EnsemblPlantsGene:GSBRNA2T00105823001	InterPro:IsoPropMal-DH-like_dom	InterPro:Isocitrate_DH_NADP	PFAM:PF00180	PANTHER:PTHR11822	PANTHER:PTHR11822:SF24
MetaCyc:PWY-5913	MetaCyc:PWY-6549	MetaCyc:PWY-6728	MetaCyc:PWY-6969	MetaCyc:PWY-7124	MetaCyc:PWY-7254
MetaCyc:PWY-7268	SMART:SM01329	SUPFAM:SSF53659	UniParc:UPI0004EDBAF9	:	:

Description

BnaC06g16500D

Coordinates

chrLK031904:+:379342..381359

Molecular Weight (calculated)

29778.6 Da

IEP (calculated)

7.145

GRAVY (calculated)

-0.228

Length

264 amino acids

Sequence
(BLAST)

001: MCLEQIPPLS FLQDGLNQSV LEGMLLEIRK LKLIFEPSGS SRKTEFEVFN FAGAGGVALA LYNTDESIRS FAESSMYTAY QKKWPLYLST KNTILKTYDG
101: RFKDIFQEVY ETNWRSKFEA AGIWNEHRLI DDLVAYAMKN LQIDFLAQGY GSLGLMTSVL VCPDGKTIEA EAAHGTVTRH YRVHQKGGET STNSIASIFA
201: WSRGLVHRAK LDSNASLLNF TEKLEAGLLI HGSKVKRDDY VNTEEFIDAV AWELRKRLLG SSRL

Best Arabidopsis Sequence Match ( AT1G54340.1 )
(BLAST)

001: MEFEKIKVIN PVVEMDGDEM TRVIWKFIKD KLIFPFLELD IKYFDLGLPN RDFTDDKVTI ETAEATLKYN VAIKCATITP DEARVREFGL KKMWRSPNGT
101: IRNILNGTVF REPIICRNIP RLVPGWTKPI CIGRHAFGDQ YRATDLIVNE PGKLKLVFEP SGSSQKTEFE VFNFTGGGVA LAMYNTDESI RAFAESSMYT
201: AYQKKWPLYL STKNTILKIY DGRFKDIFQE VYEANWRSKY EAAGIWYEHR LIDDMVAYAM KSEGGYVWAC KNYDGDVQSD FLAQGYGSLG MMTSVLVCPD
301: GKTIEAEAAH GTVTRHYRVH QKGGETSTNS IASIFAWSRG LAHRAKLDSN AALLSYTEKL EAACMGTVES GKMTKDLALL IHGAKVRRDQ YVNTEEFIDA
401: VAWELKRRLL GNNSRL

Arabidopsis Description

ICDHPeroxisomal isocitrate dehydrogenase [NADP] [Source:UniProtKB/Swiss-Prot;Acc:Q9SLK0]
SUBAcon: [peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.