CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid

Predictor Summary:

plastid 4
mitochondrion 5

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX70573	Canola	mitochondrion, plastid	91.34	91.72
Bra006262.1-P	Field mustard	mitochondrion, plastid	91.13	91.51
AT5G14590.1	Thale cress	mitochondrion, plastid	88.04	88.04
GSMUA_Achr6P36990_001	Banana	mitochondrion	39.18	85.59
PGSC0003DMT400001262	Potato	cytosol	70.31	85.04
KRH56574	Soybean	nucleus	74.85	77.23
CDY07472	Canola	cytosol	65.57	77.18
CDY16428	Canola	cytosol	65.36	76.94
Solyc02g086610.2.1	Tomato	plastid	74.64	76.86
CDY60868	Canola	cytosol	65.15	76.7
CDY39261	Canola	cytosol	65.15	76.51
TraesCS2A01G363500.1	Wheat	mitochondrion	74.64	76.05
TraesCS2B01G381500.1	Wheat	mitochondrion	74.43	75.84
HORVU2Hr1G087970.8	Barley	cytosol	62.06	75.82
CDY20354	Canola	cytosol	65.36	75.66
TraesCS2D01G361100.1	Wheat	mitochondrion	74.02	75.42
Os04t0508200-01	Rice	plasma membrane, plastid	73.61	74.69
CDX67740	Canola	cytoskeleton, cytosol, peroxisome	65.36	74.41
VIT_14s0066g00950.t01	Wine grape	mitochondrion	74.02	73.87
EES11093	Sorghum	mitochondrion	74.02	73.72
CDY68004	Canola	cytosol	24.95	72.89
GSMUA_Achr2P23210_001	Banana	mitochondrion, plastid	73.61	72.56
CDY68003	Canola	endoplasmic reticulum	27.63	70.53
Zm00001d003083_P002	Maize	mitochondrion	72.16	69.58
CDY46358	Canola	peroxisome	53.4	69.07
KRG93238	Soybean	cytosol	31.55	66.23
CDX98289	Canola	peroxisome	33.4	61.36
GSMUA_Achr5P00030_001	Banana	cytosol	9.28	60.0

Protein Annotations

KEGG:00020+1.1.1.42	KEGG:00480+1.1.1.42	KEGG:00720+1.1.1.42	Gene3D:3.40.718.10	MapMan:50.1.1	GO:A0A078CP30
EnsemblPlants:CDX78585	ProteinID:CDX78585	ProteinID:CDX78585.1	GO:GO:0000166	GO:GO:0000287	GO:GO:0003674
GO:GO:0003824	GO:GO:0004450	GO:GO:0005488	GO:GO:0006102	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016616	GO:GO:0051287	GO:GO:0055114	EnsemblPlantsGene:GSBRNA2T00129995001	InterPro:IsoCit/isopropylmalate_DH_CS
InterPro:IsoPropMal-DH-like_dom	InterPro:Isocitrate_DH_NADP	PFAM:PF00180	PIRSF:PIRSF000108	ScanProsite:PS00470	PANTHER:PTHR11822
PANTHER:PTHR11822:SF5	MetaCyc:PWY-5913	MetaCyc:PWY-6549	MetaCyc:PWY-6728	MetaCyc:PWY-6969	MetaCyc:PWY-7124
MetaCyc:PWY-7254	MetaCyc:PWY-7268	SMART:SM01329	SUPFAM:SSF53659	TIGRFAMs:TIGR00127	UniParc:UPI0004EE82D9
SEG:seg	:	:	:	:	:

Description

BnaA03g04970D

Coordinates

chrLK031815:-:1403045..1407012

Molecular Weight (calculated)

54051.7 Da

IEP (calculated)

8.694

GRAVY (calculated)

-0.284

Length

485 amino acids

Sequence
(BLAST)

001: MLNNLTRGGL MYRAGVTMLS SATSSSSSAA LSSSWKSKSP RFLSSGVFSG GASRNRVAFP VRFHRALSVR CFASSGGSDR IQVQNPIVEM DGDEMTRVIW
101: SMIKDKLILP YLDLDIKYFD LGILNRDATD DRVTVESAEA ALKYNVAIKC ATITPDEGRV KEFGLKSMWR SPNGTIRNIL DGTVFREPIM CGNIPRLVPG
201: WRKPICIGRH AFGDQYRATD QVVKGPGKLK MVFVPEDGSA PEELDVYDFK GPGVALAMYN VDESIRAFAE SSMAMALAKK WPLYLSTKNT ILKKYDGRFK
301: DIFQEVYEAN WKQKFEEHSI WYEHRLIDDM VAYAVKSEGG YVWACKNYDG DVQSDLLAQG FGSLGLMTSV LLSSDGKTLE SEAAHGTVTR HFRLHQKGQE
401: TSTNSIASIF AWTRGLEHRA KLDKNEKLMD FVKKLESSCV NTVETGKMTK DLALLVHGPK VSRDVYLNTE EFIDAVASNL QSKLN

Best Arabidopsis Sequence Match ( AT5G14590.1 )
(BLAST)

001: MLNKLTHGVF TYRASLTAML SSSTSAGLSS SFVSSRFLSS GIFSSGASRN RVTFPVQFHR ASAVRCFASS GGSDRIQVQN PIVEMDGDEM TRVIWSMIKE
101: KLILPYLDLD IKYFDLGILN RDATDDKVTV ESAEAALKYN VAIKCATITP DEGRVKEFGL KSMWRSPNGT IRNILDGTVF REPIMCSNIP RLVPGWEKPI
201: CIGRHAFGDQ YRATDTVIKG PGKLKMVFVP EDGNAPVELD VYDFKGPGVA LAMYNVDESI RAFAESSMAM ALTKKWPLYL STKNTILKKY DGRFKDIFQE
301: VYEANWKQKF EEHSIWYEHR LIDDMVAYAV KSEGGYVWAC KNYDGDVQSD LLAQGFGSLG LMTSVLLSAD GKTLESEAAH GTVTRHFRLH QKGQETSTNS
401: IASIFAWTRG LEHRAKLDKN EKLMDFVKKL ESSCVNTVET GKMTKDLALL IHGPKVSRDL FLNTEEFIDA VASKLKTQFK ELPLV

Arabidopsis Description

Isocitrate dehydrogenase [NADP], chloroplastic/mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q8LPJ5]
SUBAcon: [mitochondrion,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.