CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome

Predictor Summary:

cytosol 2
extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2
peroxisome 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	peroxisome
Any Predictor:	cytosol, peroxisome
BaCelLo:	cytosol
iPSORT:	secretory
MultiLoc:	peroxisome
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	peroxisome

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX98289	Canola	peroxisome	56.27	79.92
CDX67740	Canola	cytoskeleton, cytosol, peroxisome	89.07	78.4
AT1G54340.1	Thale cress	peroxisome	83.73	75.48
CDY68004	Canola	cytosol	32.0	72.29
GSMUA_Achr4P00910_001	Banana	cytosol	77.87	71.22
KRH43614	Soybean	peroxisome	72.8	70.0
CDY16428	Canola	cytosol	76.8	69.9
CDY60868	Canola	cytosol	76.8	69.9
CDY07472	Canola	cytosol	76.53	69.66
KRH13828	Soybean	nucleus, peroxisome	76.8	69.23
GSMUA_Achr1P05110_001	Banana	cytosol	75.47	69.02
CDY39261	Canola	cytosol	76.0	69.01
GSMUA_Achr7P14090_001	Banana	peroxisome	76.0	68.84
TraesCS3A01G166600.1	Wheat	golgi, peroxisome	76.0	68.84
TraesCS3D01G175100.1	Wheat	peroxisome	76.0	68.84
VIT_19s0085g01150.t01	Wine grape	peroxisome	76.27	68.75
CDY20354	Canola	cytosol	76.8	68.74
TraesCS3B01G199500.1	Wheat	peroxisome	75.73	68.6
HORVU3Hr1G033920.10	Barley	peroxisome	75.73	68.43
Os01t0248400-01	Rice	plasma membrane	74.13	67.15
CDY68003	Canola	endoplasmic reticulum	33.6	66.32
CDX70573	Canola	mitochondrion, plastid	68.8	53.42
CDX78585	Canola	mitochondrion, plastid	69.07	53.4

Protein Annotations

KEGG:00020+1.1.1.42	KEGG:00480+1.1.1.42	KEGG:00720+1.1.1.42	Gene3D:3.40.718.10	MapMan:50.1.1	GO:A0A078IAU4
UniProt:A0A078IAU4	EnsemblPlants:CDY46358	ProteinID:CDY46358	ProteinID:CDY46358.1	GO:GO:0003674	GO:GO:0003824
GO:GO:0004450	GO:GO:0005488	GO:GO:0006091	GO:GO:0006099	GO:GO:0006102	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016491	GO:GO:0016616	GO:GO:0046872	GO:GO:0055114
EnsemblPlantsGene:GSBRNA2T00083786001	InterPro:IsoPropMal-DH-like_dom	InterPro:Isocitrate_DH_NADP	PFAM:PF00180	PIRSF:PIRSF000108	PANTHER:PTHR11822
PANTHER:PTHR11822:SF24	MetaCyc:PWY-5913	MetaCyc:PWY-6549	MetaCyc:PWY-6728	MetaCyc:PWY-6969	MetaCyc:PWY-7124
MetaCyc:PWY-7254	MetaCyc:PWY-7268	SMART:SM01329	SUPFAM:SSF53659	TIGRFAMs:TIGR00127	UniParc:UPI0004EE1443

Description

BnaAnng08060DIsocitrate dehydrogenase [NADP] [Source:UniProtKB/TrEMBL;Acc:A0A078IAU4]

Coordinates

chrLK032663:+:43046..54687

Molecular Weight (calculated)

42137.9 Da

IEP (calculated)

9.057

GRAVY (calculated)

-0.152

Length

375 amino acids

Sequence
(BLAST)

001: MEFEKIMVAN PIVEMDASNE ITLVLVIIPF RSLFSPTWKS SEATLKYNVA IKCATITLGM GFGLKKMWRS PNGTIRNILN GTVFRELIIC RNIPRIVPGW
101: TKPICIGRHA FGDQYRATDI IVNEPGKLKL IFEPSGPSRK TEFEVFNFTG AGGVALAMYN TDESIRAFAE SSVTVRSPGK KWPLYLSMKN TILKTYDGRF
201: KDIFQEVYET NWRSKFQATG IWYEHRLIDD MNYDGDVQID FLAQGYGSLG LMTSVLVCPD GKTIEAEAAH GTVTRHYRVH QKGGETSTNS IASIFAWSRG
301: LAHRAKLDSN ASLLNFIEKL EAACMATVES GKMTKDLALL IHGSKVKRDD YVNTEEFIDA VAWELRKRLF GSSRL

Best Arabidopsis Sequence Match ( AT1G54340.1 )
(BLAST)

001: MEFEKIKVIN PVVEMDGDEM TRVIWKFIKD KLIFPFLELD IKYFDLGLPN RDFTDDKVTI ETAEATLKYN VAIKCATITP DEARVREFGL KKMWRSPNGT
101: IRNILNGTVF REPIICRNIP RLVPGWTKPI CIGRHAFGDQ YRATDLIVNE PGKLKLVFEP SGSSQKTEFE VFNFTGGGVA LAMYNTDESI RAFAESSMYT
201: AYQKKWPLYL STKNTILKIY DGRFKDIFQE VYEANWRSKY EAAGIWYEHR LIDDMVAYAM KSEGGYVWAC KNYDGDVQSD FLAQGYGSLG MMTSVLVCPD
301: GKTIEAEAAH GTVTRHYRVH QKGGETSTNS IASIFAWSRG LAHRAKLDSN AALLSYTEKL EAACMGTVES GKMTKDLALL IHGAKVRRDQ YVNTEEFIDA
401: VAWELKRRLL GNNSRL

Arabidopsis Description

ICDHPeroxisomal isocitrate dehydrogenase [NADP] [Source:UniProtKB/Swiss-Prot;Acc:Q9SLK0]
SUBAcon: [peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.