Factsheet for VIT_19s0085g01150.t01

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome

Predictor Summary:

cytosol 3
plastid 2
peroxisome 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr4P00910_001	Banana	cytosol	87.5	88.78
VIT_04s0079g00530.t01	Wine grape	cytosol	86.78	87.62
GSMUA_Achr1P05110_001	Banana	cytosol	85.82	87.07
KRH43614	Soybean	peroxisome	81.25	86.67
KRH13828	Soybean	nucleus, peroxisome	86.3	86.3
GSMUA_Achr7P14090_001	Banana	peroxisome	85.58	85.99
HORVU3Hr1G033920.10	Barley	peroxisome	83.65	83.86
TraesCS3A01G166600.1	Wheat	golgi, peroxisome	83.41	83.82
TraesCS3D01G175100.1	Wheat	peroxisome	83.17	83.57
TraesCS3B01G199500.1	Wheat	peroxisome	83.17	83.57
Os01t0248400-01	Rice	plasma membrane	82.93	83.33
Bra003336.1-P	Field mustard	cytoskeleton, cytosol, peroxisome	75.24	82.59
AT1G54340.1	Thale cress	peroxisome	81.73	81.73
CDX67740	Canola	cytoskeleton, cytosol, peroxisome	82.21	80.28
CDY46358	Canola	peroxisome	68.75	76.27
CDX98289	Canola	peroxisome	44.95	70.83
VIT_14s0066g00950.t01	Wine grape	mitochondrion	74.52	63.79

Protein Annotations

KEGG:00020+1.1.1.42	KEGG:00480+1.1.1.42	KEGG:00720+1.1.1.42	EntrezGene:100243260	wikigene:100243260	Gene3D:3.40.718.10
MapMan:50.1.1	EMBL:AM454000	ProteinID:CAN83081	ProteinID:CAN83081.1	ProteinID:CBI24124	ProteinID:CBI24124.3
UniProt:D7T0Z7	EMBL:FN595503	GO:GO:0000166	GO:GO:0000287	GO:GO:0003674	GO:GO:0003824
GO:GO:0004450	GO:GO:0005488	GO:GO:0006091	GO:GO:0006099	GO:GO:0006102	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016491	GO:GO:0016616	GO:GO:0046872	GO:GO:0051287
GO:GO:0055114	InterPro:IsoCit/isopropylmalate_DH_CS	InterPro:IsoPropMal-DH-like_dom	InterPro:Isocitrate_DH_NADP	EntrezGene:LOC100243260	wikigene:LOC100243260
PFAM:PF00180	PIRSF:PIRSF000108	ScanProsite:PS00470	PANTHER:PTHR11822	PANTHER:PTHR11822:SF24	SMART:SM01329
SUPFAM:SSF53659	TIGR:TC61997	TIGRFAMs:TIGR00127	UniParc:UPI00019857E0	ArrayExpress:VIT_19s0085g01150	EnsemblPlantsGene:VIT_19s0085g01150
EnsemblPlants:VIT_19s0085g01150.t01	unigene:Vvi.17927	RefSeq:XP_002268982	RefSeq:XP_002268982.1	:	:

Description

Isocitrate dehydrogenase [NADP] [Source:UniProtKB/TrEMBL;Acc:D7T0Z7]

Coordinates

chr19:+:23832464..23836137

Molecular Weight (calculated)

46893.4 Da

IEP (calculated)

8.106

GRAVY (calculated)

-0.301

Length

416 amino acids

Sequence
(BLAST)

001: MALEKIKVDN PIVEMDGDEM TRVFWKSIKD KLILPFLELD IKYFDLGLPN REATRDQVTV DSAHATLKYN VAIKCATITP DEARVKEFNL KQMWKSPNGT
101: IRNILNGTVF REPIICKNVP RLIPGWSKPI CIGRHAYGDQ YRATDAVIEG SGKLKMVFVP DGPNEIKELE VYQFTGAGGV ALSMYNTDES IRAFAEASMN
201: MAYQKRWPLY LSTKNTILKK YDGRFKDIFQ EVYEAQWKSK FEAVGIWYEH RLIDDMVAYA LKSDGGYVWA CKNYDGDVQS DFLAQGFGSL GLMTSVLVCP
301: DGKTIEAEAA HGTVTRHYRV HQKGGETSTN SIASIFAWSR GLAHRAKLDG NARLLDFTEK LEAACIATVE SGKMTKDLAL LIHGPKVTRA QYLNTEEFIE
401: AVAEELRARL PKRSKF

Best Arabidopsis Sequence Match ( AT1G65930.1 )
(BLAST)

001: MAFEKIKVAN PIVEMDGDEM TRVIWKSIKD KLITPFVELD IKYFDLGLPH RDATDDKVTI ESAEATKKYN VAIKCATITP DEGRVTEFGL KQMWRSPNGT
101: IRNILNGTVF REPIICKNVP KLVPGWTKPI CIGRHAFGDQ YRATDAVIKG PGKLTMTFEG KDGKTETEVF TFTGEGGVAM AMYNTDESIR AFADASMNTA
201: YEKKWPLYLS TKNTILKKYD GRFKDIFQEV YEASWKSKYD AAGIWYEHRL IDDMVAYALK SEGGYVWACK NYDGDVQSDF LAQGFGSLGL MTSVLVCPDG
301: KTIEAEAAHG TVTRHFRVHQ KGGETSTNSI ASIFAWTRGL AHRAKLDDNA KLLDFTEKLE AACVGTVESG KMTKDLALII HGSKLSRDTY LNTEEFIDAV
401: AAELKERLNA

Arabidopsis Description

CICDHIsocitrate dehydrogenase [NADP] [Source:UniProtKB/TrEMBL;Acc:A0A178W7K0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.