Factsheet for Bra003336.1-P

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, cytoskeleton, cytosol

Predictor Summary:

cytosol 3
vacuole 1
peroxisome 4
mitochondrion 1
plastid 1
cytoskeleton 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX67740	Canola	cytoskeleton, cytosol, peroxisome	99.21	88.26
AT1G54340.1	Thale cress	peroxisome	92.88	84.62
GSMUA_Achr4P00910_001	Banana	cytosol	85.49	79.02
Bra004134.1-P	Field mustard	cytosol	84.7	77.91
Bra039746.1-P	Field mustard	cytosol	84.7	77.91
GSMUA_Achr7P14090_001	Banana	peroxisome	84.17	77.05
Bra038201.1-P	Field mustard	cytosol	84.96	76.85
GSMUA_Achr1P05110_001	Banana	cytosol	83.11	76.83
KRH43614	Soybean	peroxisome	78.89	76.67
KRH13828	Soybean	nucleus, peroxisome	83.64	76.2
TraesCS3A01G166600.1	Wheat	golgi, peroxisome	82.59	75.6
HORVU3Hr1G033920.10	Barley	peroxisome	82.59	75.42
TraesCS3B01G199500.1	Wheat	peroxisome	82.32	75.36
TraesCS3D01G175100.1	Wheat	peroxisome	82.32	75.36
VIT_19s0085g01150.t01	Wine grape	peroxisome	82.59	75.24
Os01t0248400-01	Rice	plasma membrane	81.0	74.15
Bra006262.1-P	Field mustard	mitochondrion, plastid	74.41	58.39

Protein Annotations

KEGG:00020+1.1.1.42	KEGG:00480+1.1.1.42	KEGG:00720+1.1.1.42	Gene3D:3.40.718.10	MapMan:50.1.1	EnsemblPlantsGene:Bra003336
EnsemblPlants:Bra003336.1	EnsemblPlants:Bra003336.1-P	GO:GO:0000166	GO:GO:0000287	GO:GO:0003674	GO:GO:0003824
GO:GO:0004450	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005777	GO:GO:0005886	GO:GO:0006091	GO:GO:0006099	GO:GO:0006102	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016020	GO:GO:0016491	GO:GO:0016616	GO:GO:0046872
GO:GO:0051287	GO:GO:0055114	InterPro:IsoCit/isopropylmalate_DH_CS	InterPro:IsoPropMal-DH-like_dom	InterPro:Isocitrate_DH_NADP	UniProt:M4CGK3
PFAM:PF00180	PIRSF:PIRSF000108	ScanProsite:PS00470	PANTHER:PTHR11822	PANTHER:PTHR11822:SF24	SMART:SM01329
SUPFAM:SSF53659	TIGRFAMs:TIGR00127	UniParc:UPI0002541691	:	:	:

Description

AT1G54340 (E=4e-195) ICDH | ICDH (ISOCITRATE DEHYDROGENASE); isocitrate dehydrogenase (NADP+)/ oxidoreductase, acting on the CH-OH group of donors, NAD or NADP as acceptor

Coordinates

chrA07:+:12666637..12669650

Molecular Weight (calculated)

42895.3 Da

IEP (calculated)

8.700

GRAVY (calculated)

-0.337

Length

379 amino acids

Sequence
(BLAST)

001: MEFEKIKVAN PIVEMDGDEM TRVIWKFIKD KYNVAIKCAT ITPDETRVRE FGLKKIWRSP NGTIRNILNG TVFREPIICR NIPRIVPGWT KPICIGRHAF
101: GDQYRATDIV VNEPGKLKLI FEPSGSSRKT EFEVFNFTGA GGVALAMYNT DESIRSFAES SMYTAYQKKW PLYLSTKNTI LKTYDGRFKD IFQEVYETNW
201: RSKFEAAGIW YEHRLIDDMV AYAMKSEGGY VWACKNYDGD VQSDFLAQGY GSLGLMTSVL VCPDGKTIEA EAAHGTVTRH YRVHQKGGET STNSIASIFA
301: WSRGLAHRAK LDSNASLLNF TEKLEAACMG TVESGKMTKD LALLIHGSKV KRDDYVNTEE FIDAVAWELR KRLLGSSRL

Best Arabidopsis Sequence Match ( AT1G54340.1 )
(BLAST)

001: MEFEKIKVIN PVVEMDGDEM TRVIWKFIKD KLIFPFLELD IKYFDLGLPN RDFTDDKVTI ETAEATLKYN VAIKCATITP DEARVREFGL KKMWRSPNGT
101: IRNILNGTVF REPIICRNIP RLVPGWTKPI CIGRHAFGDQ YRATDLIVNE PGKLKLVFEP SGSSQKTEFE VFNFTGGGVA LAMYNTDESI RAFAESSMYT
201: AYQKKWPLYL STKNTILKIY DGRFKDIFQE VYEANWRSKY EAAGIWYEHR LIDDMVAYAM KSEGGYVWAC KNYDGDVQSD FLAQGYGSLG MMTSVLVCPD
301: GKTIEAEAAH GTVTRHYRVH QKGGETSTNS IASIFAWSRG LAHRAKLDSN AALLSYTEKL EAACMGTVES GKMTKDLALL IHGAKVRRDQ YVNTEEFIDA
401: VAWELKRRLL GNNSRL

Arabidopsis Description

ICDHPeroxisomal isocitrate dehydrogenase [NADP] [Source:UniProtKB/Swiss-Prot;Acc:Q9SLK0]
SUBAcon: [peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.