Factsheet for Bra038201.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
plastid 2
mitochondrion 2
cytoskeleton 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra027469.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G65930.1	Bra027469.1-P	AT5G42980.1	15352244

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY20354	Canola	cytosol	99.05	99.05
Bra004134.1-P	Field mustard	cytosol	96.18	97.82
Bra039746.1-P	Field mustard	cytosol	95.94	97.57
AT1G65930.1	Thale cress	cytosol	94.27	96.34
PGSC0003DMT400081790	Potato	cytosol, mitochondrion	87.59	88.43
VIT_04s0079g00530.t01	Wine grape	cytosol	86.87	88.35
Solyc01g005560.2.1	Tomato	extracellular, plastid	87.11	87.95
KRH17285	Soybean	endoplasmic reticulum, mitochondrion	85.44	86.68
KRH72930	Soybean	endoplasmic reticulum, nucleus	84.96	86.2
Bra003336.1-P	Field mustard	cytoskeleton, cytosol, peroxisome	76.85	84.96
Solyc11g011930.1.1	Tomato	plastid, unclear	84.01	83.81
PGSC0003DMT400034694	Potato	peroxisome	70.88	66.74
Bra006262.1-P	Field mustard	mitochondrion, plastid	75.42	65.42

Protein Annotations

KEGG:00020+1.1.1.42	KEGG:00480+1.1.1.42	KEGG:00720+1.1.1.42	Gene3D:3.40.718.10	MapMan:50.1.1	EnsemblPlantsGene:Bra038201
EnsemblPlants:Bra038201.1	EnsemblPlants:Bra038201.1-P	GO:GO:0000166	GO:GO:0000287	GO:GO:0003674	GO:GO:0003824
GO:GO:0004450	GO:GO:0005488	GO:GO:0006091	GO:GO:0006099	GO:GO:0006102	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016491	GO:GO:0016616	GO:GO:0046872	GO:GO:0051287
GO:GO:0055114	InterPro:IsoCit/isopropylmalate_DH_CS	InterPro:IsoPropMal-DH-like_dom	InterPro:Isocitrate_DH_NADP	UniProt:M4FAT6	PFAM:PF00180
PIRSF:PIRSF000108	ScanProsite:PS00470	PANTHER:PTHR11822	PANTHER:PTHR11822:SF24	SMART:SM01329	SUPFAM:SSF53659
TIGRFAMs:TIGR00127	UniParc:UPI000253E53C	SEG:seg	:	:	:

Description

AT1G65930 (E=7e-225) | isocitrate dehydrogenase, putative / NADP+ isocitrate dehydrogenase, putative

Coordinates

chrScaffold000141:+:401635..404381

Molecular Weight (calculated)

46902.1 Da

IEP (calculated)

7.794

GRAVY (calculated)

-0.352

Length

419 amino acids

Sequence
(BLAST)

001: MAFEKIKVAN PIVEMDGDEM TRVIWKSIKD KLITPFVELD IKYFDLGLPH RDATDDKVTV ESAEATKKYN VAIKCATITP DEGRVTEFGL KQMWRSPNGT
101: IRNILNGTVF REPIICKNVP KLVPGWTKPI CIGRHAFGDQ YRATDAVIKG PGKLTLTFEG KDGKTETEVF TFTGEGGVAM AMYNTDESIR AFAEASMNNA
201: YQKKWPLYLS TKNTILKKYD GRFKDIFQEV YEASWKSKYE AAGIWYEHRL IDDMVAYALK SEGGYVWACK NYDGDVQSDF LAQGFGSLGL MTSVLVCPDG
301: KTIEAEAAHG TVTRHYRVHQ KGGETSTNSI ASIFAWTRGL AHRAKLDGNS KLLEFTEKLE AACVGTVESG KMTKDLALII HGSKLSRDTY LNTEEFIDAV
401: ADDLKTRLRR RNNLLNSCI

Best Arabidopsis Sequence Match ( AT1G65930.1 )
(BLAST)

001: MAFEKIKVAN PIVEMDGDEM TRVIWKSIKD KLITPFVELD IKYFDLGLPH RDATDDKVTI ESAEATKKYN VAIKCATITP DEGRVTEFGL KQMWRSPNGT
101: IRNILNGTVF REPIICKNVP KLVPGWTKPI CIGRHAFGDQ YRATDAVIKG PGKLTMTFEG KDGKTETEVF TFTGEGGVAM AMYNTDESIR AFADASMNTA
201: YEKKWPLYLS TKNTILKKYD GRFKDIFQEV YEASWKSKYD AAGIWYEHRL IDDMVAYALK SEGGYVWACK NYDGDVQSDF LAQGFGSLGL MTSVLVCPDG
301: KTIEAEAAHG TVTRHFRVHQ KGGETSTNSI ASIFAWTRGL AHRAKLDDNA KLLDFTEKLE AACVGTVESG KMTKDLALII HGSKLSRDTY LNTEEFIDAV
401: AAELKERLNA

Arabidopsis Description

CICDHIsocitrate dehydrogenase [NADP] [Source:UniProtKB/TrEMBL;Acc:A0A178W7K0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.