Factsheet for VIT_04s0079g00530.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
vacuole 1
mitochondrion 2
plastid 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AT1G65930.1	Thale cress	cytosol	89.08	89.51
Solyc01g005560.2.1	Tomato	extracellular, plastid	89.56	88.92
Bra004134.1-P	Field mustard	cytosol	88.83	88.83
Bra039746.1-P	Field mustard	cytosol	88.59	88.59
CDY07472	Canola	cytosol	88.59	88.59
CDY16428	Canola	cytosol	88.59	88.59
PGSC0003DMT400081790	Potato	cytosol, mitochondrion	89.08	88.43
KRH17285	Soybean	endoplasmic reticulum, mitochondrion	88.59	88.38
KRH72930	Soybean	endoplasmic reticulum, nucleus	88.59	88.38
CDY60868	Canola	cytosol	88.35	88.35
CDY39261	Canola	cytosol	88.11	87.89
Bra038201.1-P	Field mustard	cytosol	88.35	86.87
VIT_19s0085g01150.t01	Wine grape	peroxisome	87.62	86.78
Solyc11g011930.1.1	Tomato	plastid, unclear	88.35	86.67
CDY20354	Canola	cytosol	88.11	86.63
CDY68004	Canola	cytosol	33.5	83.13
CDY68003	Canola	endoplasmic reticulum	36.65	79.47
PGSC0003DMT400034694	Potato	peroxisome	75.49	69.89
VIT_14s0066g00950.t01	Wine grape	mitochondrion	76.94	65.23

Protein Annotations

KEGG:00020+1.1.1.42	KEGG:00480+1.1.1.42	KEGG:00720+1.1.1.42	EntrezGene:100261578	wikigene:100261578	Gene3D:3.40.718.10
MapMan:50.1.1	UniProt:A5BX54	EMBL:AM474378	ProteinID:CAN72808	ProteinID:CAN72808.1	ProteinID:CBI27352
ProteinID:CBI27352.3	EMBL:FN595753	GO:GO:0000166	GO:GO:0000287	GO:GO:0003674	GO:GO:0003824
GO:GO:0004450	GO:GO:0005488	GO:GO:0005507	GO:GO:0005575	GO:GO:0005576	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0005886	GO:GO:0006091	GO:GO:0006099
GO:GO:0006102	GO:GO:0006139	GO:GO:0006739	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152
GO:GO:0009506	GO:GO:0009536	GO:GO:0009570	GO:GO:0009605	GO:GO:0009607	GO:GO:0009628
GO:GO:0009651	GO:GO:0009987	GO:GO:0010043	GO:GO:0016020	GO:GO:0016491	GO:GO:0016616
GO:GO:0042742	GO:GO:0046686	GO:GO:0046872	GO:GO:0048046	GO:GO:0051287	GO:GO:0055114
InterPro:IsoCit/isopropylmalate_DH_CS	InterPro:IsoPropMal-DH-like_dom	InterPro:Isocitrate_DH_NADP	EntrezGene:LOC100261578	wikigene:LOC100261578	PFAM:PF00180
PIRSF:PIRSF000108	ScanProsite:PS00470	PANTHER:PTHR11822	PANTHER:PTHR11822:SF24	SMART:SM01329	SUPFAM:SSF53659
TIGR:TC54202	TIGR:TC64931	TIGRFAMs:TIGR00127	UniParc:UPI0001521D51	ArrayExpress:VIT_04s0079g00530	EnsemblPlantsGene:VIT_04s0079g00530
EnsemblPlants:VIT_04s0079g00530.t01	unigene:Vvi.24280	unigene:Vvi.8088	RefSeq:XP_002270617	RefSeq:XP_002270617.1	:

Description

Isocitrate dehydrogenase [NADP] [Source:UniProtKB/TrEMBL;Acc:A5BX54]

Coordinates

chr4:+:11130821..11137310

Molecular Weight (calculated)

46286.4 Da

IEP (calculated)

6.328

GRAVY (calculated)

-0.253

Length

412 amino acids

Sequence
(BLAST)

001: MAFDKIKVAN PIVEMDGDEM TRVFWKSIKD KLIFPFLELD IKYFDLGLPH RDATDDKVTV ESAEATLKYN VAIKCATITP DEGRMKEFDL KQMWKSPNGT
101: IRNILNGTVF REPIICKNIP RLVPSWTKPI CIGRHAFGDQ YRATDTVIKG AGKLKLVFVP EGKDEKTELE VFNFTGAGGV ALSMYNTDES IYAFAEASMN
201: TAYLKQWPLY LSTKNTILKK YDGRFKDIFQ EVYETQWKSK YEAAGIWYEH RLIDDMVAYA LKSEGGYVWA CKNYDGDVQS DFLAQGFGSL GLMTSVLVCP
301: DGKTIEAEAA HGTVTRHFRV HQKGGETSTN SIASIFAWSR GLAHRAKLDD NARLLDFTEK LEAACVGTVE SGKMTKDLAL LIHGSKVTRD WYLNTEEFID
401: AVAAELTAKL SC

Best Arabidopsis Sequence Match ( AT1G65930.1 )
(BLAST)

001: MAFEKIKVAN PIVEMDGDEM TRVIWKSIKD KLITPFVELD IKYFDLGLPH RDATDDKVTI ESAEATKKYN VAIKCATITP DEGRVTEFGL KQMWRSPNGT
101: IRNILNGTVF REPIICKNVP KLVPGWTKPI CIGRHAFGDQ YRATDAVIKG PGKLTMTFEG KDGKTETEVF TFTGEGGVAM AMYNTDESIR AFADASMNTA
201: YEKKWPLYLS TKNTILKKYD GRFKDIFQEV YEASWKSKYD AAGIWYEHRL IDDMVAYALK SEGGYVWACK NYDGDVQSDF LAQGFGSLGL MTSVLVCPDG
301: KTIEAEAAHG TVTRHFRVHQ KGGETSTNSI ASIFAWTRGL AHRAKLDDNA KLLDFTEKLE AACVGTVESG KMTKDLALII HGSKLSRDTY LNTEEFIDAV
401: AAELKERLNA

Arabidopsis Description

CICDHIsocitrate dehydrogenase [NADP] [Source:UniProtKB/TrEMBL;Acc:A0A178W7K0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.