Factsheet for PGSC0003DMT400034694

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome

Predictor Summary:

cytosol 2
vacuole 2
peroxisome 4
plastid 1
extracellular 1
endoplasmic reticulum 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	peroxisome
Any Predictor:	cytosol, peroxisome, plastid, secretory
BaCelLo:	cytosol
EpiLoc:	vacuole
MultiLoc:	peroxisome
Plant-mPloc:	plastid
PProwler:	peroxisome
PTS1:	peroxisome
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	peroxisome

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc11g011930.1.1	Tomato	plastid, unclear	78.43	83.1
PGSC0003DMT400081790	Potato	cytosol, mitochondrion	73.26	78.55
VIT_04s0079g00530.t01	Wine grape	cytosol	69.89	75.49
KRH17285	Soybean	endoplasmic reticulum, mitochondrion	69.44	74.82
KRH72930	Soybean	endoplasmic reticulum, nucleus	69.21	74.58
CDY68003	Canola	endoplasmic reticulum	31.46	73.68
AT1G65930.1	Thale cress	cytosol	66.52	72.2
Bra039746.1-P	Field mustard	cytosol	66.74	72.09
CDY07472	Canola	cytosol	66.74	72.09
CDY16428	Canola	cytosol	66.74	72.09
CDY60868	Canola	cytosol	66.52	71.84
Bra004134.1-P	Field mustard	cytosol	66.52	71.84
CDY39261	Canola	cytosol	66.29	71.43
Bra038201.1-P	Field mustard	cytosol	66.74	70.88
CDY20354	Canola	cytosol	66.07	70.17
PGSC0003DMT400001262	Potato	cytosol	60.9	67.58
CDY68004	Canola	cytosol	21.8	58.43

Protein Annotations

KEGG:00020+1.1.1.42	KEGG:00480+1.1.1.42	KEGG:00720+1.1.1.42	EntrezGene:102578331	Gene3D:3.40.718.10	MapMan:50.1.1
GO:GO:0000166	GO:GO:0000287	GO:GO:0003674	GO:GO:0003824	GO:GO:0004450	GO:GO:0005488
GO:GO:0006091	GO:GO:0006099	GO:GO:0006102	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016491	GO:GO:0016616	GO:GO:0046872	GO:GO:0051287	GO:GO:0055114	InterPro:IsoCit/isopropylmalate_DH_CS
InterPro:IsoPropMal-DH-like_dom	InterPro:Isocitrate_DH_NADP	UniProt:M1B145	PFAM:PF00180	EnsemblPlantsGene:PGSC0003DMG400013332	PGSC:PGSC0003DMG400013332
EnsemblPlants:PGSC0003DMT400034694	PIRSF:PIRSF000108	ScanProsite:PS00470	PANTHER:PTHR11822	PANTHER:PTHR11822:SF24	SMART:SM01329
SUPFAM:SSF53659	TIGRFAMs:TIGR00127	UniParc:UPI00029589FF	:	:	:

Description

Isocitrate dehydrogenase [NADP] [Source:PGSC_GENE;Acc:PGSC0003DMG400013332]

Coordinates

chr11:+:837806..841056

Molecular Weight (calculated)

50815.5 Da

IEP (calculated)

8.833

GRAVY (calculated)

-0.248

Length

445 amino acids

Sequence
(BLAST)

001: MTRVIWKLIK DKLILPFLEL DIKYFDLGLP HRDATDDKVT IESAEATLKY NVAIKCATIT PDEARMEEFN LKHMWKSPNG TIRNILNGTV FREPILCKNI
101: PRLVPGWSKP ICIGRHAFGD QYRATDTVIQ GAGKLKLVFV PEGTDEKTEF EVYNFTGAGG VALSMYNTDE SICSFAEASM NMAYQKKWPL YLSTKNTILK
201: KYDGRFKDIF QEVYESKWKS KFEEAGIWYE HRLIDDMVAY ALKSDGGYVW ACKNYDGDVQ SDFLAQGFGS LGLMTSILMQ KVLRFLENKT HRSLDHFGFI
301: ADLRLYFGFK WGWNIWCRYV RMERLWKQKQ PMELLHATTG FIRKEGFGLD SGGKSVACDV SIRHTSWICN LATGRAKLDN NAALLDFTKK LEAACIGAVE
401: NGKMTKDLAL IIHGSKVARR QYVNTEEFID AVADELKARL LKAKI

Best Arabidopsis Sequence Match ( AT1G65930.1 )
(BLAST)

001: MAFEKIKVAN PIVEMDGDEM TRVIWKSIKD KLITPFVELD IKYFDLGLPH RDATDDKVTI ESAEATKKYN VAIKCATITP DEGRVTEFGL KQMWRSPNGT
101: IRNILNGTVF REPIICKNVP KLVPGWTKPI CIGRHAFGDQ YRATDAVIKG PGKLTMTFEG KDGKTETEVF TFTGEGGVAM AMYNTDESIR AFADASMNTA
201: YEKKWPLYLS TKNTILKKYD GRFKDIFQEV YEASWKSKYD AAGIWYEHRL IDDMVAYALK SEGGYVWACK NYDGDVQSDF LAQGFGSLGL MTSVLVCPDG
301: KTIEAEAAHG TVTRHFRVHQ KGGETSTNSI ASIFAWTRGL AHRAKLDDNA KLLDFTEKLE AACVGTVESG KMTKDLALII HGSKLSRDTY LNTEEFIDAV
401: AAELKERLNA

Arabidopsis Description

CICDHIsocitrate dehydrogenase [NADP] [Source:UniProtKB/TrEMBL;Acc:A0A178W7K0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.