CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, endoplasmic reticulum

Predictor Summary:

cytosol 4
plastid 2
mitochondrion 2
peroxisome 1

Predictors

GFP

MS/MS

Papers

endoplasmic reticulum: 28499913
mitochondrion: 28499913

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH72930	Soybean	endoplasmic reticulum, nucleus	99.27	99.27
Solyc01g005560.2.1	Tomato	extracellular, plastid	89.83	89.4
PGSC0003DMT400081790	Potato	cytosol, mitochondrion	89.83	89.4
AT1G65930.1	Thale cress	cytosol	88.38	89.02
VIT_04s0079g00530.t01	Wine grape	cytosol	88.38	88.59
Bra039746.1-P	Field mustard	cytosol	87.65	87.86
CDY07472	Canola	cytosol	87.65	87.86
CDY16428	Canola	cytosol	87.65	87.86
CDY60868	Canola	cytosol	87.65	87.86
Bra004134.1-P	Field mustard	cytosol	87.41	87.62
CDY39261	Canola	cytosol	87.17	87.17
Solyc11g011930.1.1	Tomato	plastid, unclear	87.41	85.95
Bra038201.1-P	Field mustard	cytosol	86.68	85.44
CDY20354	Canola	cytosol	86.44	85.2
KRH13828	Soybean	nucleus, peroxisome	84.5	83.89
KRH43614	Soybean	peroxisome	79.18	83.85
CDY68004	Canola	cytosol	33.66	83.73
CDY68003	Canola	endoplasmic reticulum	35.35	76.84
PGSC0003DMT400034694	Potato	peroxisome	74.82	69.44
KRH56574	Soybean	nucleus	78.21	68.72
KRG93238	Soybean	cytosol	34.62	61.9

Protein Annotations

KEGG:00020+1.1.1.42	KEGG:00480+1.1.1.42	KEGG:00720+1.1.1.42	EntrezGene:100791166	Gene3D:3.40.718.10	MapMan:50.1.1
UniProt:A0A0R0GQK7	ncoils:Coil	EnsemblPlantsGene:GLYMA_14G211000	GO:GO:0000166	GO:GO:0000287	GO:GO:0003674
GO:GO:0003824	GO:GO:0004450	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005975	GO:GO:0006091	GO:GO:0006097	GO:GO:0006099	GO:GO:0006102
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016491	GO:GO:0016616	GO:GO:0046872
GO:GO:0051287	GO:GO:0055114	InterPro:IsoCit/isopropylmalate_DH_CS	InterPro:IsoPropMal-DH-like_dom	InterPro:Isocitrate_DH_NADP	EnsemblPlants:KRH17285
ProteinID:KRH17285	ProteinID:KRH17285.1	EMBL:L12157	PFAM:PF00180	PIRSF:PIRSF000108	ScanProsite:PS00470
PANTHER:PTHR11822	PANTHER:PTHR11822:SF24	MetaCyc:PWY-5913	MetaCyc:PWY-6549	MetaCyc:PWY-6728	MetaCyc:PWY-6969
MetaCyc:PWY-7124	MetaCyc:PWY-7254	MetaCyc:PWY-7268	UniProt:Q06197	SMART:SM01329	SUPFAM:SSF53659
TIGRFAMs:TIGR00127	UniParc:UPI000012D1BA	:	:	:	:

Description

IDH1hypothetical protein

Coordinates

chr14:+:47592207..47597473

Molecular Weight (calculated)

46052.1 Da

IEP (calculated)

6.136

GRAVY (calculated)

-0.207

Length

413 amino acids

Sequence
(BLAST)

001: MAAFQKIKVA NPIVEMDGDE MTRVIWKSIK DKLILPFLEL DIKYYDLGLP YRDETDDKVT IESAEATLKY NVAIKCATIT PDEARVKEFG LKSMWKSPNG
101: TIRNILNGTV FREPILCKNI PRLVPGWTKA ICIGRHAFGD QYRATDTVIK GAGKLKLVFV PEGQGEETEF EVFNFTGEGG VSLAMYNTDE SIRSFAEASM
201: ATALEKKWPL YLSTKNTILK KYDGRFKDIF QEVYEASWKS KFEAAGIWYE HRLIDDMVAY ALKSEGGYVW ACKNYDGDVQ SDFLAQGFGS LGLMTSVLVC
301: PDGKTIEAEA AHGTVTRHFR VHQKGGETST NSIASIFAWT RGLAHRAKLD DNAKLLDFTE KLEAACIGVV EAGKMTKDLA LILHGSKLSR EHYLNTEEFI
401: DAVAAELSAR LSA

Best Arabidopsis Sequence Match ( AT1G65930.1 )
(BLAST)

001: MAFEKIKVAN PIVEMDGDEM TRVIWKSIKD KLITPFVELD IKYFDLGLPH RDATDDKVTI ESAEATKKYN VAIKCATITP DEGRVTEFGL KQMWRSPNGT
101: IRNILNGTVF REPIICKNVP KLVPGWTKPI CIGRHAFGDQ YRATDAVIKG PGKLTMTFEG KDGKTETEVF TFTGEGGVAM AMYNTDESIR AFADASMNTA
201: YEKKWPLYLS TKNTILKKYD GRFKDIFQEV YEASWKSKYD AAGIWYEHRL IDDMVAYALK SEGGYVWACK NYDGDVQSDF LAQGFGSLGL MTSVLVCPDG
301: KTIEAEAAHG TVTRHFRVHQ KGGETSTNSI ASIFAWTRGL AHRAKLDDNA KLLDFTEKLE AACVGTVESG KMTKDLALII HGSKLSRDTY LNTEEFIDAV
401: AAELKERLNA

Arabidopsis Description

CICDHIsocitrate dehydrogenase [NADP] [Source:UniProtKB/TrEMBL;Acc:A0A178W7K0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.