CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, nucleus

Predictor Summary:

cytosol 2
plastid 2
peroxisome 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH43614	Soybean	peroxisome	92.55	98.72
GSMUA_Achr4P00910_001	Banana	cytosol	86.78	88.05
GSMUA_Achr7P14090_001	Banana	peroxisome	87.02	87.44
VIT_19s0085g01150.t01	Wine grape	peroxisome	86.3	86.3
GSMUA_Achr1P05110_001	Banana	cytosol	84.13	85.37
TraesCS3A01G166600.1	Wheat	golgi, peroxisome	84.86	85.27
TraesCS3D01G175100.1	Wheat	peroxisome	84.62	85.02
TraesCS3B01G199500.1	Wheat	peroxisome	84.62	85.02
Os01t0248400-01	Rice	plasma membrane	84.62	85.02
KRH17285	Soybean	endoplasmic reticulum, mitochondrion	83.89	84.5
HORVU3Hr1G033920.10	Barley	peroxisome	84.13	84.34
KRH72930	Soybean	endoplasmic reticulum, nucleus	83.65	84.26
Bra003336.1-P	Field mustard	cytoskeleton, cytosol, peroxisome	76.2	83.64
AT1G54340.1	Thale cress	peroxisome	83.17	83.17
CDX67740	Canola	cytoskeleton, cytosol, peroxisome	83.65	81.69
CDY46358	Canola	peroxisome	69.23	76.8
CDX98289	Canola	peroxisome	44.95	70.83
KRH56574	Soybean	nucleus	77.4	68.51
KRG93238	Soybean	cytosol	35.82	64.5

Protein Annotations

KEGG:00020+1.1.1.42	KEGG:00480+1.1.1.42	KEGG:00720+1.1.1.42	EntrezGene:100816688	Gene3D:3.40.718.10	MapMan:50.1.1
EMBL:ACUP02009792	EnsemblPlantsGene:GLYMA_15G266700	GO:GO:0000166	GO:GO:0000287	GO:GO:0003674	GO:GO:0003824
GO:GO:0004450	GO:GO:0005488	GO:GO:0006091	GO:GO:0006099	GO:GO:0006102	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016491	GO:GO:0016616	GO:GO:0046872	GO:GO:0051287
GO:GO:0055114	UniProt:I1MJH1	InterPro:IsoCit/isopropylmalate_DH_CS	InterPro:IsoPropMal-DH-like_dom	InterPro:Isocitrate_DH_NADP	EnsemblPlants:KRH13828
ProteinID:KRH13828	ProteinID:KRH13828.1	PFAM:PF00180	PIRSF:PIRSF000108	ScanProsite:PS00470	PANTHER:PTHR11822
PANTHER:PTHR11822:SF24	MetaCyc:PWY-5913	MetaCyc:PWY-6549	MetaCyc:PWY-6728	MetaCyc:PWY-6969	MetaCyc:PWY-7124
MetaCyc:PWY-7254	MetaCyc:PWY-7268	SMART:SM01329	SUPFAM:SSF53659	TIGRFAMs:TIGR00127	UniParc:UPI000233BE85

Description

hypothetical protein

Coordinates

chr15:+:50295277..50301000

Molecular Weight (calculated)

46856.3 Da

IEP (calculated)

8.689

GRAVY (calculated)

-0.291

Length

416 amino acids

Sequence
(BLAST)

001: MGFQKIRVGN PIVEMDGDEM TRVIWKLIKD KLIFPYLELD IKYFDLGLPH RDATNDRVTI ESAEATLKYN VAIKCATITP DEARIKEFNL KQMWRSPNGT
101: IRNILNGTVF REPIICKNIP RLVSGWTKPI CIGRHAFGDQ YRATDTVIKG PGKLKLVFAP SGNEGIKELE VYNFTGDGGI ALSMYNTDES IRAFAEASMN
201: FAYQKKWPLY LSTKNTILKK YDGRFKDIFQ EVFDTQWSHK FKAAGIWYEH RLIDDMVAYA LKSDGGYVWA CKNYDGDVQS DFLAQGFGSL GLMTSVLVCP
301: DGKTIEAEAA HGTVTRHYRV HQKGGETSTN SIASIFAWSR GLAHRAKLDG NARLLDFTEK LEAACIGTVE LGKMTKDLAL LVHGPKVSRY QYLNTEEFID
401: AVAKELQTRL SSQSKL

Best Arabidopsis Sequence Match ( AT1G65930.1 )
(BLAST)

001: MAFEKIKVAN PIVEMDGDEM TRVIWKSIKD KLITPFVELD IKYFDLGLPH RDATDDKVTI ESAEATKKYN VAIKCATITP DEGRVTEFGL KQMWRSPNGT
101: IRNILNGTVF REPIICKNVP KLVPGWTKPI CIGRHAFGDQ YRATDAVIKG PGKLTMTFEG KDGKTETEVF TFTGEGGVAM AMYNTDESIR AFADASMNTA
201: YEKKWPLYLS TKNTILKKYD GRFKDIFQEV YEASWKSKYD AAGIWYEHRL IDDMVAYALK SEGGYVWACK NYDGDVQSDF LAQGFGSLGL MTSVLVCPDG
301: KTIEAEAAHG TVTRHFRVHQ KGGETSTNSI ASIFAWTRGL AHRAKLDDNA KLLDFTEKLE AACVGTVESG KMTKDLALII HGSKLSRDTY LNTEEFIDAV
401: AAELKERLNA

Arabidopsis Description

CICDHIsocitrate dehydrogenase [NADP] [Source:UniProtKB/TrEMBL;Acc:A0A178W7K0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.