Factsheet for AT1G54340.1

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome

Predictor Summary:

cytosol 1
peroxisome 3
cytoskeleton 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	peroxisome
Any Predictor:	cytoskeleton, cytosol, peroxisome
BaCelLo:	cytosol
MultiLoc:	peroxisome
PProwler:	peroxisome
WoLF PSORT:	cytoskeleton
YLoc:	peroxisome

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra003336.1-P	Field mustard	cytoskeleton, cytosol, peroxisome	84.62	92.88
CDX67740	Canola	cytoskeleton, cytosol, peroxisome	92.55	90.38
GSMUA_Achr4P00910_001	Banana	cytosol	85.1	86.34
AT1G65930.1	Thale cress	cytosol	84.13	85.37
GSMUA_Achr1P05110_001	Banana	cytosol	83.41	84.63
CDY46358	Canola	peroxisome	75.48	83.73
KRH13828	Soybean	nucleus, peroxisome	83.17	83.17
KRH43614	Soybean	peroxisome	77.88	83.08
GSMUA_Achr7P14090_001	Banana	peroxisome	82.21	82.61
TraesCS3A01G166600.1	Wheat	golgi, peroxisome	81.49	81.88
VIT_19s0085g01150.t01	Wine grape	peroxisome	81.73	81.73
TraesCS3B01G199500.1	Wheat	peroxisome	81.25	81.64
TraesCS3D01G175100.1	Wheat	peroxisome	81.25	81.64
HORVU3Hr1G033920.10	Barley	peroxisome	81.25	81.45
Os01t0248400-01	Rice	plasma membrane	80.29	80.68
CDX98289	Canola	peroxisome	50.24	79.17
AT5G14590.1	Thale cress	mitochondrion, plastid	74.76	64.12

Protein Annotations

KEGG:00020+1.1.1.42	KEGG:00480+1.1.1.42	KEGG:00720+1.1.1.42	Gene3D:3.40.718.10	MapMan:50.1.1	EntrezGene:841875
ProteinID:AAD25614.1	ProteinID:AEE33082.1	EMBL:AF316501	ProteinID:ANM59653.1	ArrayExpress:AT1G54340	EnsemblPlantsGene:AT1G54340
RefSeq:AT1G54340	TAIR:AT1G54340	RefSeq:AT1G54340-TAIR-G	EnsemblPlants:AT1G54340.1	TAIR:AT1G54340.1	EMBL:BT025983
GO:GO:0000166	GO:GO:0000287	GO:GO:0003674	GO:GO:0003824	GO:GO:0004450	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005777	GO:GO:0005886
GO:GO:0006091	GO:GO:0006099	GO:GO:0006102	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016020	GO:GO:0016491	GO:GO:0016616	GO:GO:0046872	GO:GO:0051287	GO:GO:0055114
Symbol:ICDH	InterPro:IsoCit/isopropylmalate_DH_CS	InterPro:IsoPropMal-DH-like_dom	InterPro:Isocitrate_DH_NADP	RefSeq:NP_001321996.1	RefSeq:NP_175836.1
PFAM:PF00180	PIRSF:PIRSF000108	PO:PO:0000013	PO:PO:0000037	PO:PO:0000230	PO:PO:0000293
PO:PO:0001054	PO:PO:0001078	PO:PO:0001081	PO:PO:0001185	PO:PO:0004507	PO:PO:0007064
PO:PO:0007095	PO:PO:0007098	PO:PO:0007103	PO:PO:0007115	PO:PO:0007123	PO:PO:0007611
PO:PO:0007616	PO:PO:0008019	PO:PO:0009005	PO:PO:0009006	PO:PO:0009009	PO:PO:0009010
PO:PO:0009025	PO:PO:0009029	PO:PO:0009030	PO:PO:0009031	PO:PO:0009032	PO:PO:0009046
PO:PO:0009047	PO:PO:0009052	PO:PO:0020030	PO:PO:0020038	PO:PO:0020100	PO:PO:0020137
PO:PO:0025022	PO:PO:0025281	ScanProsite:PS00470	PANTHER:PTHR11822	PANTHER:PTHR11822:SF24	UniProt:Q9SLK0
SMART:SM01329	SUPFAM:SSF53659	TIGRFAMs:TIGR00127	UniParc:UPI00000A0D16	:	:

Description

ICDHPeroxisomal isocitrate dehydrogenase [NADP] [Source:UniProtKB/Swiss-Prot;Acc:Q9SLK0]

Coordinates

chr1:+:20283326..20286786

Molecular Weight (calculated)

47236.6 Da

IEP (calculated)

7.827

GRAVY (calculated)

-0.304

Length

416 amino acids

Sequence
(BLAST)

001: MEFEKIKVIN PVVEMDGDEM TRVIWKFIKD KLIFPFLELD IKYFDLGLPN RDFTDDKVTI ETAEATLKYN VAIKCATITP DEARVREFGL KKMWRSPNGT
101: IRNILNGTVF REPIICRNIP RLVPGWTKPI CIGRHAFGDQ YRATDLIVNE PGKLKLVFEP SGSSQKTEFE VFNFTGGGVA LAMYNTDESI RAFAESSMYT
201: AYQKKWPLYL STKNTILKIY DGRFKDIFQE VYEANWRSKY EAAGIWYEHR LIDDMVAYAM KSEGGYVWAC KNYDGDVQSD FLAQGYGSLG MMTSVLVCPD
301: GKTIEAEAAH GTVTRHYRVH QKGGETSTNS IASIFAWSRG LAHRAKLDSN AALLSYTEKL EAACMGTVES GKMTKDLALL IHGAKVRRDQ YVNTEEFIDA
401: VAWELKRRLL GNNSRL

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.