Factsheet for TraesCS3A01G166600.1

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, golgi

Predictor Summary:

peroxisome 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi, peroxisome
Any Predictor:	peroxisome
MultiLoc:	peroxisome
PProwler:	peroxisome
WoLF PSORT:	peroxisome
YLoc:	peroxisome

golgi: 25769308

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3B01G199500.1	Wheat	peroxisome	99.76	99.76
TraesCS3D01G175100.1	Wheat	peroxisome	99.76	99.76
HORVU3Hr1G033920.10	Barley	peroxisome	98.31	98.07
Os01t0248400-01	Rice	plasma membrane	92.03	92.03
GSMUA_Achr7P14090_001	Banana	peroxisome	87.44	87.44
KRH43614	Soybean	peroxisome	80.43	85.38
KRH13828	Soybean	nucleus, peroxisome	85.27	84.86
VIT_19s0085g01150.t01	Wine grape	peroxisome	83.82	83.41
Bra003336.1-P	Field mustard	cytoskeleton, cytosol, peroxisome	75.6	82.59
TraesCS3A01G237100.1	Wheat	golgi	81.4	82.4
AT1G54340.1	Thale cress	peroxisome	81.88	81.49
CDX67740	Canola	cytoskeleton, cytosol, peroxisome	83.09	80.75
CDY46358	Canola	peroxisome	68.84	76.0
CDX98289	Canola	peroxisome	44.2	69.32
TraesCS2A01G363500.1	Wheat	mitochondrion	76.57	66.6

Protein Annotations

KEGG:00020+1.1.1.42	KEGG:00480+1.1.1.42	KEGG:00720+1.1.1.42	Gene3D:3.40.718.10	MapMan:50.1.1	GO:GO:0000166
GO:GO:0000287	GO:GO:0003674	GO:GO:0003824	GO:GO:0004450	GO:GO:0005488	GO:GO:0006102
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016616	GO:GO:0051287	GO:GO:0055114
InterPro:IsoCit/isopropylmalate_DH_CS	InterPro:IsoPropMal-DH-like_dom	InterPro:Isocitrate_DH_NADP	PFAM:PF00180	PIRSF:PIRSF000108	ScanProsite:PS00470
PANTHER:PTHR11822	PANTHER:PTHR11822:SF22	SMART:SM01329	SUPFAM:SSF53659	TIGRFAMs:TIGR00127	EnsemblPlantsGene:TraesCS3A01G166600
EnsemblPlants:TraesCS3A01G166600.1	:	:	:	:	:

Description

No Description!

Coordinates

chr3A:-:171174860..171179640

Molecular Weight (calculated)

46599.8 Da

IEP (calculated)

7.152

GRAVY (calculated)

-0.287

Length

414 amino acids

Sequence
(BLAST)

001: MAFDKIQVAN PIVEMDGDEM TRIIWKWIKD KLIFPFLDLD IKYFDLGLPN RDATGDKVTI ESAEATLKYN VAIKCATVTP DEGRVKEFNL KAMWRSPNGT
101: IRNILNGTVF REPIICKNVP RLVPGWTKPI CIGRHAFGDQ YRATDTIIRG PGKLKLIFDG IEEQIELDVF NFSGAGGVAL SMYNTDESIR AFAEASMNVA
201: YQKRWPLYLS TKNTILKKYD GRFKDIFQEN YETNWRGRFE DAGIWYEHRL IDDMVAYALK SEGGYVWACK NYDGDVQSDL VAQGFGSLGL MTSVLVCPDG
301: RTVEAEAAHG TVTRHYRVHQ KGGETSTNSI ASIFAWSTGL AHRAKLDDNK RLLDFTQKLE AACVGTVESG KMTKDLALLI HGPTVSRDKY LNTMEFIDAV
401: AEELRTRLSA KSKL

Best Arabidopsis Sequence Match ( AT1G65930.1 )
(BLAST)

001: MAFEKIKVAN PIVEMDGDEM TRVIWKSIKD KLITPFVELD IKYFDLGLPH RDATDDKVTI ESAEATKKYN VAIKCATITP DEGRVTEFGL KQMWRSPNGT
101: IRNILNGTVF REPIICKNVP KLVPGWTKPI CIGRHAFGDQ YRATDAVIKG PGKLTMTFEG KDGKTETEVF TFTGEGGVAM AMYNTDESIR AFADASMNTA
201: YEKKWPLYLS TKNTILKKYD GRFKDIFQEV YEASWKSKYD AAGIWYEHRL IDDMVAYALK SEGGYVWACK NYDGDVQSDF LAQGFGSLGL MTSVLVCPDG
301: KTIEAEAAHG TVTRHFRVHQ KGGETSTNSI ASIFAWTRGL AHRAKLDDNA KLLDFTEKLE AACVGTVESG KMTKDLALII HGSKLSRDTY LNTEEFIDAV
401: AAELKERLNA

Arabidopsis Description

CICDHIsocitrate dehydrogenase [NADP] [Source:UniProtKB/TrEMBL;Acc:A0A178W7K0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.