CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, cytoskeleton, cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
cytoskeleton 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytoskeleton, cytosol, peroxisome
Any Predictor:	cytosol, peroxisome
BaCelLo:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytoskeleton
YLoc:	peroxisome

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra003336.1-P	Field mustard	cytoskeleton, cytosol, peroxisome	88.26	99.21
AT1G54340.1	Thale cress	peroxisome	90.38	92.55
CDY46358	Canola	peroxisome	78.4	89.07
GSMUA_Achr4P00910_001	Banana	cytosol	83.33	86.59
CDX98289	Canola	peroxisome	53.52	86.36
CDY16428	Canola	cytosol	82.39	85.19
CDY60868	Canola	cytosol	82.39	85.19
GSMUA_Achr7P14090_001	Banana	peroxisome	82.63	85.02
CDY07472	Canola	cytosol	82.16	84.95
GSMUA_Achr1P05110_001	Banana	cytosol	81.22	84.39
KRH43614	Soybean	peroxisome	77.23	84.36
CDY39261	Canola	cytosol	81.69	84.26
CDY20354	Canola	cytosol	82.63	84.01
CDY68004	Canola	cytosol	32.63	83.73
KRH13828	Soybean	nucleus, peroxisome	81.69	83.65
TraesCS3A01G166600.1	Wheat	golgi, peroxisome	80.75	83.09
TraesCS3D01G175100.1	Wheat	peroxisome	80.75	83.09
HORVU3Hr1G033920.10	Barley	peroxisome	80.75	82.89
TraesCS3B01G199500.1	Wheat	peroxisome	80.52	82.85
VIT_19s0085g01150.t01	Wine grape	peroxisome	80.28	82.21
Os01t0248400-01	Rice	plasma membrane	79.11	81.4
CDY68003	Canola	endoplasmic reticulum	33.33	74.74
CDX70573	Canola	mitochondrion, plastid	74.18	65.42
CDX78585	Canola	mitochondrion, plastid	74.41	65.36

Protein Annotations

KEGG:00020+1.1.1.42	KEGG:00480+1.1.1.42	KEGG:00720+1.1.1.42	Gene3D:3.40.718.10	MapMan:50.1.1	GO:A0A078BSZ7
EnsemblPlants:CDX67740	ProteinID:CDX67740	ProteinID:CDX67740.1	GO:GO:0000166	GO:GO:0000287	GO:GO:0003674
GO:GO:0003824	GO:GO:0004450	GO:GO:0005488	GO:GO:0006102	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016616	GO:GO:0051287	GO:GO:0055114	EnsemblPlantsGene:GSBRNA2T00098927001	InterPro:IsoCit/isopropylmalate_DH_CS
InterPro:IsoPropMal-DH-like_dom	InterPro:Isocitrate_DH_NADP	PFAM:PF00180	PIRSF:PIRSF000108	ScanProsite:PS00470	PANTHER:PTHR11822
PANTHER:PTHR11822:SF24	MetaCyc:PWY-5913	MetaCyc:PWY-6549	MetaCyc:PWY-6728	MetaCyc:PWY-6969	MetaCyc:PWY-7124
MetaCyc:PWY-7254	MetaCyc:PWY-7268	SMART:SM01329	SUPFAM:SSF53659	TIGRFAMs:TIGR00127	UniParc:UPI0004EE3FAD
SEG:seg	:	:	:	:	:

Description

BnaA07g17800D

Coordinates

chrLK031787:+:2049968..2053264

Molecular Weight (calculated)

48120.5 Da

IEP (calculated)

7.828

GRAVY (calculated)

-0.319

Length

426 amino acids

Sequence
(BLAST)

001: MEFEKIKVAN PIVEMDGDEM TRVIWRFIKD KLILPYLELD IKYFDLGLPN RDSTDDKVTT ESAEATLKYN VAIKCATITP DETRVREFGL KKMWRSPNGT
101: IRNILNGTVF REPIICRNIP RIVPGWTKPI CIGRHAFGDQ YRATDIVVNE PGKLKLIFEP SGSSRKTEFE VFNFTGAGGV ALAMYNTDES IRSFAESSMY
201: TAYQKKWPLY LSTKNTILKT YDGRFKDIFQ EVYETNWRSK FEAAGIWYEH RLIDDMVAYA MKSEGGYVWA CKNYDGDVQS DFLAQGYGSL GLMTSVLVCP
301: DGKTIEAEAA HGTVTRHYRV HQKGGETSTN SIASIFAWSR GLAHRAKLDS NASLLNFTEK LEAACMGTVE SGKMTKDLAL LIHGSKVKRD DYVNTEEFID
401: AVAWELRKRL LGSSSLNLSL PVSRSL

Best Arabidopsis Sequence Match ( AT1G54340.1 )
(BLAST)

001: MEFEKIKVIN PVVEMDGDEM TRVIWKFIKD KLIFPFLELD IKYFDLGLPN RDFTDDKVTI ETAEATLKYN VAIKCATITP DEARVREFGL KKMWRSPNGT
101: IRNILNGTVF REPIICRNIP RLVPGWTKPI CIGRHAFGDQ YRATDLIVNE PGKLKLVFEP SGSSQKTEFE VFNFTGGGVA LAMYNTDESI RAFAESSMYT
201: AYQKKWPLYL STKNTILKIY DGRFKDIFQE VYEANWRSKY EAAGIWYEHR LIDDMVAYAM KSEGGYVWAC KNYDGDVQSD FLAQGYGSLG MMTSVLVCPD
301: GKTIEAEAAH GTVTRHYRVH QKGGETSTNS IASIFAWSRG LAHRAKLDSN AALLSYTEKL EAACMGTVES GKMTKDLALL IHGAKVRRDQ YVNTEEFIDA
401: VAWELKRRLL GNNSRL

Arabidopsis Description

ICDHPeroxisomal isocitrate dehydrogenase [NADP] [Source:UniProtKB/Swiss-Prot;Acc:Q9SLK0]
SUBAcon: [peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.