CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol
BaCelLo:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX98289	Canola	peroxisome	63.25	39.77
CDY20354	Canola	cytosol	97.59	38.66
CDY07472	Canola	cytosol	91.57	36.89
CDY16428	Canola	cytosol	91.57	36.89
CDY60868	Canola	cytosol	91.57	36.89
CDY39261	Canola	cytosol	91.57	36.8
PGSC0003DMT400081790	Potato	cytosol, mitochondrion	86.14	34.46
Solyc01g005560.2.1	Tomato	extracellular, plastid	85.54	34.22
KRH17285	Soybean	endoplasmic reticulum, mitochondrion	83.73	33.66
VIT_04s0079g00530.t01	Wine grape	cytosol	83.13	33.5
KRH72930	Soybean	endoplasmic reticulum, nucleus	83.13	33.41
CDX67740	Canola	cytoskeleton, cytosol, peroxisome	83.73	32.63
Solyc11g011930.1.1	Tomato	plastid, unclear	81.33	32.14
CDY46358	Canola	peroxisome	72.29	32.0
CDX70573	Canola	mitochondrion, plastid	72.89	25.05
CDX78585	Canola	mitochondrion, plastid	72.89	24.95
PGSC0003DMT400034694	Potato	peroxisome	58.43	21.8
CDY68003	Canola	endoplasmic reticulum	0.0	0.0

Protein Annotations

KEGG:00020+1.1.1.42	KEGG:00480+1.1.1.42	KEGG:00720+1.1.1.42	Gene3D:3.40.718.10	MapMan:50.1.1	GO:A0A078JMJ1
UniProt:A0A078JMJ1	EnsemblPlants:CDY68004	ProteinID:CDY68004	ProteinID:CDY68004.1	GO:GO:0003674	GO:GO:0003824
GO:GO:0004450	GO:GO:0006102	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016616
GO:GO:0055114	EnsemblPlantsGene:GSBRNA2T00068411001	InterPro:IsoPropMal-DH-like_dom	InterPro:Isocitrate_DH_NADP	PFAM:PF00180	PANTHER:PTHR11822
PANTHER:PTHR11822:SF24	MetaCyc:PWY-5913	MetaCyc:PWY-6549	MetaCyc:PWY-6728	MetaCyc:PWY-6969	MetaCyc:PWY-7124
MetaCyc:PWY-7254	MetaCyc:PWY-7268	SMART:SM01329	SUPFAM:SSF53659	UniParc:UPI0004EDCFE7	SEG:seg

Description

BnaAnng25850DBnaAnng25850D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JMJ1]

Coordinates

chrLK036751:+:1501..2356

Molecular Weight (calculated)

18129.6 Da

IEP (calculated)

7.975

GRAVY (calculated)

-0.186

Length

166 amino acids

Sequence
(BLAST)

001: MVAYALKSEG GYVWACKNYV GDVQSDFLAQ GFGSLGLMTS VLVCPDGKTI EAEAAHGTVT RHYRVHQKGG ETSTNSIASI FAWTRGLAHR AKLDGNSKLL
101: EFTEKLEAAC VGTVESGKMT KDLALIIHGS KLSRDTYLNT EEFIDAVADD LKTRLRRRNN LLNSCI

Best Arabidopsis Sequence Match ( AT1G54340.1 )
(BLAST)

001: MEFEKIKVIN PVVEMDGDEM TRVIWKFIKD KLIFPFLELD IKYFDLGLPN RDFTDDKVTI ETAEATLKYN VAIKCATITP DEARVREFGL KKMWRSPNGT
101: IRNILNGTVF REPIICRNIP RLVPGWTKPI CIGRHAFGDQ YRATDLIVNE PGKLKLVFEP SGSSQKTEFE VFNFTGGGVA LAMYNTDESI RAFAESSMYT
201: AYQKKWPLYL STKNTILKIY DGRFKDIFQE VYEANWRSKY EAAGIWYEHR LIDDMVAYAM KSEGGYVWAC KNYDGDVQSD FLAQGYGSLG MMTSVLVCPD
301: GKTIEAEAAH GTVTRHYRVH QKGGETSTNS IASIFAWSRG LAHRAKLDSN AALLSYTEKL EAACMGTVES GKMTKDLALL IHGAKVRRDQ YVNTEEFIDA
401: VAWELKRRLL GNNSRL

Arabidopsis Description

ICDHPeroxisomal isocitrate dehydrogenase [NADP] [Source:UniProtKB/Swiss-Prot;Acc:Q9SLK0]
SUBAcon: [peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.