CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

plastid 1
peroxisome 1
extracellular 2
endoplasmic reticulum 3
vacuole 2
plasma membrane 2
golgi 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum
Any Predictor:	peroxisome, plastid, secretory
BaCelLo:	plastid
MultiLoc:	peroxisome
PProwler:	secretory
TargetP:	secretory
YLoc:	endoplasmic reticulum

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY60868	Canola	cytosol	88.42	40.78
CDY16428	Canola	cytosol	88.42	40.78
CDY20354	Canola	cytosol	89.47	40.57
CDY07472	Canola	cytosol	87.89	40.53
CDY39261	Canola	cytosol	86.84	39.95
VIT_04s0079g00530.t01	Wine grape	cytosol	79.47	36.65
PGSC0003DMT400081790	Potato	cytosol, mitochondrion	77.37	35.42
Solyc01g005560.2.1	Tomato	extracellular, plastid	77.37	35.42
KRH17285	Soybean	endoplasmic reticulum, mitochondrion	76.84	35.35
KRH72930	Soybean	endoplasmic reticulum, nucleus	76.84	35.35
CDY46358	Canola	peroxisome	66.32	33.6
Solyc11g011930.1.1	Tomato	plastid, unclear	74.21	33.57
CDX67740	Canola	cytoskeleton, cytosol, peroxisome	74.74	33.33
PGSC0003DMT400034694	Potato	peroxisome	73.68	31.46
CDX70573	Canola	mitochondrion, plastid	71.05	27.95
CDX98289	Canola	peroxisome	38.42	27.65
CDX78585	Canola	mitochondrion, plastid	70.53	27.63
CDY68004	Canola	cytosol	0.0	0.0

Protein Annotations

KEGG:00020+1.1.1.42	KEGG:00480+1.1.1.42	KEGG:00720+1.1.1.42	Gene3D:3.40.718.10	MapMan:50.1.1	GO:A0A078JKF1
UniProt:A0A078JKF1	EnsemblPlants:CDY68003	ProteinID:CDY68003	ProteinID:CDY68003.1	GO:GO:0003674	GO:GO:0003824
GO:GO:0004450	GO:GO:0006102	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016616
GO:GO:0055114	EnsemblPlantsGene:GSBRNA2T00068410001	InterPro:IsoPropMal-DH-like_dom	InterPro:Isocitrate_DH_NADP	PFAM:PF00180	PANTHER:PTHR11822
PANTHER:PTHR11822:SF24	MetaCyc:PWY-5913	MetaCyc:PWY-6549	MetaCyc:PWY-6728	MetaCyc:PWY-6969	MetaCyc:PWY-7124
MetaCyc:PWY-7254	MetaCyc:PWY-7268	SMART:SM01329	SUPFAM:SSF53659	SignalP:SignalP-noTM	UniParc:UPI0004EF1C85
SEG:seg	:	:	:	:	:

Description

BnaAnng25840DBnaAnng25840D protein (Fragment) [Source:UniProtKB/TrEMBL;Acc:A0A078JKF1]

Coordinates

chrLK036751:+:3..1391

Molecular Weight (calculated)

21679.1 Da

IEP (calculated)

9.931

GRAVY (calculated)

-0.437

Length

190 amino acids

Sequence
(BLAST)

001: DRSKNENNLK KTLLIFFPLL LFLRADEGRV TEFGLKQMWR SPNGTIRNIL NGTVFREPII CKNVPKLVPG WTKPICIGRH AFGDQYRATD AVIKGPGKLT
101: LTFEGKDGKT ETEVFTFTGE GGVAMAMYNT DESIRAFAEA SMNNAYQKKW PLYLSTKNTI LKKYDGRFKD IFQEVYEASW KSKYEAAGIW

Best Arabidopsis Sequence Match ( AT1G54340.1 )
(BLAST)

001: MEFEKIKVIN PVVEMDGDEM TRVIWKFIKD KLIFPFLELD IKYFDLGLPN RDFTDDKVTI ETAEATLKYN VAIKCATITP DEARVREFGL KKMWRSPNGT
101: IRNILNGTVF REPIICRNIP RLVPGWTKPI CIGRHAFGDQ YRATDLIVNE PGKLKLVFEP SGSSQKTEFE VFNFTGGGVA LAMYNTDESI RAFAESSMYT
201: AYQKKWPLYL STKNTILKIY DGRFKDIFQE VYEANWRSKY EAAGIWYEHR LIDDMVAYAM KSEGGYVWAC KNYDGDVQSD FLAQGYGSLG MMTSVLVCPD
301: GKTIEAEAAH GTVTRHYRVH QKGGETSTNS IASIFAWSRG LAHRAKLDSN AALLSYTEKL EAACMGTVES GKMTKDLALL IHGAKVRRDQ YVNTEEFIDA
401: VAWELKRRLL GNNSRL

Arabidopsis Description

ICDHPeroxisomal isocitrate dehydrogenase [NADP] [Source:UniProtKB/Swiss-Prot;Acc:Q9SLK0]
SUBAcon: [peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.