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Tomato
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Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: unclear, plastid

Predictor Summary:
  • cytosol 3
  • vacuole 1
  • mitochondrion 2
  • peroxisome 2
  • plastid 1
  • cytoskeleton 1
Predictors GFP MS/MS Papers
Winner Takes All:plastid, unclear
Any Predictor:cytoskeleton, cytosol, mitochondrion, peroxisome, plastid, vacuole
BaCelLo:cytosol
EpiLoc:vacuole
MultiLoc:cytosol
Plant-mPloc:cytosol, mitochondrion, peroxisome, plastid
PProwler:mitochondrion
WoLF PSORT:cytoskeleton
YLoc:peroxisome
 plastid: 22908117
unclear: 26455813
msms PMID: 22908117 doi
C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech
Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.
msms PMID: 26455813 doi
P Paul, P Chaturvedi, M Selymesi, A Ghatak, A Mesihovic, KD Scharf, W Weckwerth, S Simm, E Schleiff
Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium; Goethe University, Cluster of Excellence Frankfurt, Frankfurt/Main, Germany; Goethe University, Buchmann Institute of Molecular Life Sciences, Frankfurt/Main, Germany. Electronic address: schleiff@bio.uni-frankfurt.de., SPOT-ITN Consortium; University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria., University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria; School of Biotechnology and Bioinformatics, D.Y. Patil University, Mumbai, India.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Solyc01g005560.2.1 Tomato extracellular, plastid 89.52 90.6
VIT_04s0079g00530.t01 Wine grape cytosol 86.67 88.35
KRH17285 Soybean endoplasmic reticulum, mitochondrion 85.95 87.41
KRH72930 Soybean endoplasmic reticulum, nucleus 85.48 86.92
Bra039746.1-P Field mustard cytosol 83.57 85.19
CDY07472 Canola cytosol 83.57 85.19
CDY16428 Canola cytosol 83.57 85.19
CDY60868 Canola cytosol 83.33 84.95
Bra004134.1-P Field mustard cytosol 83.33 84.95
AT1G65930.1 Thale cress cytosol 82.86 84.88
CDY39261 Canola cytosol 83.1 84.5
Bra038201.1-P Field mustard cytosol 83.81 84.01
CDY20354 Canola cytosol 83.1 83.29
CDY68004 Canola cytosol 32.14 81.33
PGSC0003DMT400034694 Potato peroxisome 83.1 78.43
CDY68003 Canola endoplasmic reticulum 33.57 74.21
Solyc02g086610.2.1 Tomato plastid 74.05 66.03
Protein Annotations
KEGG:00020+1.1.1.42KEGG:00480+1.1.1.42KEGG:00720+1.1.1.42Gene3D:3.40.718.10MapMan:50.1.1GO:GO:0000166
GO:GO:0000287GO:GO:0003674GO:GO:0003824GO:GO:0004450GO:GO:0005488GO:GO:0006091
GO:GO:0006099GO:GO:0006102GO:GO:0008150GO:GO:0008152GO:GO:0009987GO:GO:0016491
GO:GO:0016616GO:GO:0046872GO:GO:0051287GO:GO:0055114InterPro:IsoCit/isopropylmalate_DH_CSInterPro:IsoPropMal-DH-like_dom
InterPro:Isocitrate_DH_NADPUniProt:K4D5Z8PFAM:PF00180PIRSF:PIRSF000108ScanProsite:PS00470PANTHER:PTHR11822
PANTHER:PTHR11822:SF24SMART:SM01329SUPFAM:SSF53659EnsemblPlantsGene:Solyc11g011930.1EnsemblPlants:Solyc11g011930.1.1TIGRFAMs:TIGR00127
UniParc:UPI0002769DDD:::::
Description
Isocitrate dehydrogenase [NADP] [Source:UniProtKB/TrEMBL;Acc:K4D5Z8]
Coordinates
chr11:-:4860240..4865923
Molecular Weight (calculated)
47289.8 Da
IEP (calculated)
7.807
GRAVY (calculated)
-0.288
Length
420 amino acids
Sequence
(BLAST)
001: MAFQKIKVAN PIVEMDGDEM TRVIWKLIKD KLILPFLELD IKYFDLGLPH RDATDDKVTI ESAEATLKYN VAIKCATITP DEARMNEFNL KHMWKSPNGT
101: IRNILNGTVF REPILCKNIP RLVPSWSKPI CIGRHAFGDQ YRATDTVIQG AGKLKLVFVP EGTDEKTEFE VYNFTGAGGV ALSMYNTDES ICSFAEASMN
201: MAYQKKWPLY LSTKNTILKK YDGRFKDIFQ EVYESKWKSK FEEAGIWYEH RLIDDMVAYA LKSDGGYVWA CKNYDGDVQS DFLAQGFGSL GLMTSILICP
301: DGKTVEAEAA HGTVTRHYRV HQKGGETSTN SIASIFAWTR GLAHRAKLDN NTALLDFTKK LEAACIGAVE NGKMTKDLAL IIHGSKVARR QYVNTGEFID
401: AVADELKARL LKDRFPLRGE
Best Arabidopsis Sequence Match ( AT1G65930.1 )
(BLAST)
001: MAFEKIKVAN PIVEMDGDEM TRVIWKSIKD KLITPFVELD IKYFDLGLPH RDATDDKVTI ESAEATKKYN VAIKCATITP DEGRVTEFGL KQMWRSPNGT
101: IRNILNGTVF REPIICKNVP KLVPGWTKPI CIGRHAFGDQ YRATDAVIKG PGKLTMTFEG KDGKTETEVF TFTGEGGVAM AMYNTDESIR AFADASMNTA
201: YEKKWPLYLS TKNTILKKYD GRFKDIFQEV YEASWKSKYD AAGIWYEHRL IDDMVAYALK SEGGYVWACK NYDGDVQSDF LAQGFGSLGL MTSVLVCPDG
301: KTIEAEAAHG TVTRHFRVHQ KGGETSTNSI ASIFAWTRGL AHRAKLDDNA KLLDFTEKLE AACVGTVESG KMTKDLALII HGSKLSRDTY LNTEEFIDAV
401: AAELKERLNA
Arabidopsis Description
CICDHIsocitrate dehydrogenase [NADP] [Source:UniProtKB/TrEMBL;Acc:A0A178W7K0]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.