Factsheet for Solyc02g086610.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9
vacuole 1
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

plastid: 20363867
extracellular: 22364583
plastid: 22908117
unclear: 26455813
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

msms PMID: 20363867 doi

C Barsan, P Sanchez-Bel, C Rombaldi, I Egea, M Rossignol, M Kuntz, M Zouine, A Latché, M Bouzayen, JC Pech

Université de Toulouse, INP-ENSA Toulouse, Génomique et Biotechnologie des Fruits, Avenue de l'Agrobiopole BP 32607, F-31326 Castanet-Tolosan, France.

msms PMID: 26455813 doi

P Paul, P Chaturvedi, M Selymesi, A Ghatak, A Mesihovic, KD Scharf, W Weckwerth, S Simm, E Schleiff

Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium; Goethe University, Cluster of Excellence Frankfurt, Frankfurt/Main, Germany; Goethe University, Buchmann Institute of Molecular Life Sciences, Frankfurt/Main, Germany. Electronic address: schleiff@bio.uni-frankfurt.de., SPOT-ITN Consortium; University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria., University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria; School of Biotechnology and Bioinformatics, D.Y. Patil University, Mumbai, India.

msms PMID: 22364583 doi

P Shah, AL Powell, R Orlando, C Bergmann, G Gutierrez-Sanchez

Complex Carbohydrate Research Center, University of Georgia, Athens, Georgia, United States.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400001262	Potato	cytosol	84.29	99.0
GSMUA_Achr6P36990_001	Banana	mitochondrion	41.19	87.39
KRH56574	Soybean	nucleus	77.07	77.23
Solyc01g005560.2.1	Tomato	extracellular, plastid	67.94	77.11
VIT_14s0066g00950.t01	Wine grape	mitochondrion	78.56	76.13
TraesCS2A01G363500.1	Wheat	mitochondrion	76.01	75.21
Os04t0508200-01	Rice	plasma membrane, plastid	76.22	75.1
HORVU2Hr1G087970.8	Barley	cytosol	63.27	75.06
TraesCS2B01G381500.1	Wheat	mitochondrion	75.8	75.0
CDX70573	Canola	mitochondrion, plastid	76.65	74.74
CDX78585	Canola	mitochondrion, plastid	76.86	74.64
TraesCS2D01G361100.1	Wheat	mitochondrion	75.37	74.58
Bra006262.1-P	Field mustard	mitochondrion, plastid	76.01	74.12
Solyc11g011930.1.1	Tomato	plastid, unclear	66.03	74.05
EES11093	Sorghum	mitochondrion	76.43	73.92
AT5G14590.1	Thale cress	mitochondrion, plastid	75.58	73.4
GSMUA_Achr2P23210_001	Banana	mitochondrion, plastid	75.58	72.36
KRG93238	Soybean	cytosol	33.76	68.83
Zm00001d003083_P002	Maize	mitochondrion	73.04	68.39
GSMUA_Achr5P00030_001	Banana	cytosol	9.13	57.33

Protein Annotations

KEGG:00020+1.1.1.42	KEGG:00480+1.1.1.42	KEGG:00720+1.1.1.42	Gene3D:3.40.718.10	MapMan:50.1.1	GO:GO:0000166
GO:GO:0000287	GO:GO:0003674	GO:GO:0003824	GO:GO:0004450	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0006091	GO:GO:0006099
GO:GO:0006102	GO:GO:0008150	GO:GO:0008152	GO:GO:0009507	GO:GO:0009534	GO:GO:0009536
GO:GO:0009570	GO:GO:0009579	GO:GO:0009987	GO:GO:0016491	GO:GO:0016616	GO:GO:0046872
GO:GO:0051287	GO:GO:0055114	InterPro:IsoCit/isopropylmalate_DH_CS	InterPro:IsoPropMal-DH-like_dom	InterPro:Isocitrate_DH_NADP	UniProt:K4BBG9
PFAM:PF00180	PIRSF:PIRSF000108	ScanProsite:PS00470	PANTHER:PTHR11822	PANTHER:PTHR11822:SF5	SMART:SM01329
SUPFAM:SSF53659	EnsemblPlantsGene:Solyc02g086610.2	EnsemblPlants:Solyc02g086610.2.1	TIGRFAMs:TIGR00127	UniParc:UPI0002767B46	SEG:seg

Description

Isocitrate dehydrogenase [NADP] [Source:UniProtKB/TrEMBL;Acc:K4BBG9]

Coordinates

chr2:+:49269079..49274548

Molecular Weight (calculated)

52722.0 Da

IEP (calculated)

7.864

GRAVY (calculated)

-0.278

Length

471 amino acids

Sequence
(BLAST)

001: MAGVASFVSS SSASASSIAS KKFYFQVNSN RQLFNNRVSL TTRIPNASIR CFASTSGPTS KILVQNPIVE MDGDEMTRVI WKMIKDKLIY PYLELDTKYY
101: DLGILNRDAT DDQVTVESAE ATLKYNVAVK CATITPDETR VKEFGLKSMW KSPNGTIRNI LNGTVFREPI LCTNIPRIVP GWKKPICIGR HAFGDQYRAT
201: DAIINGPGKL KMVFVPENGE SPTELDVYDF KGPGIALAMY NVDQSIRAFA ESSMSMAFSK KWPLYLSTKN TILKKYDGRF KDIFQEVYEE KWKQQFEEHS
301: IWYEHRLIDD MVAYVLKSEG GYVWACKNYD GDVQSDLLAQ GFGSLGLMTS VLLSSDGKTL EAEAAHGTVT RHFRLHQKGQ ETSTNSVASI FAWTRGLGHR
401: AQLDGNQKLL EFVHTLEASC IGTIESGKMT KDLAILAHGP KVSREFYLNT EEFIDAVAQK LQEKLHASAP I

Best Arabidopsis Sequence Match ( AT5G14590.1 )
(BLAST)

001: MLNKLTHGVF TYRASLTAML SSSTSAGLSS SFVSSRFLSS GIFSSGASRN RVTFPVQFHR ASAVRCFASS GGSDRIQVQN PIVEMDGDEM TRVIWSMIKE
101: KLILPYLDLD IKYFDLGILN RDATDDKVTV ESAEAALKYN VAIKCATITP DEGRVKEFGL KSMWRSPNGT IRNILDGTVF REPIMCSNIP RLVPGWEKPI
201: CIGRHAFGDQ YRATDTVIKG PGKLKMVFVP EDGNAPVELD VYDFKGPGVA LAMYNVDESI RAFAESSMAM ALTKKWPLYL STKNTILKKY DGRFKDIFQE
301: VYEANWKQKF EEHSIWYEHR LIDDMVAYAV KSEGGYVWAC KNYDGDVQSD LLAQGFGSLG LMTSVLLSAD GKTLESEAAH GTVTRHFRLH QKGQETSTNS
401: IASIFAWTRG LEHRAKLDKN EKLMDFVKKL ESSCVNTVET GKMTKDLALL IHGPKVSRDL FLNTEEFIDA VASKLKTQFK ELPLV

Arabidopsis Description

Isocitrate dehydrogenase [NADP], chloroplastic/mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q8LPJ5]
SUBAcon: [mitochondrion,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.