Factsheet for Zm00001d003083_P002

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 6

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES11093	Sorghum	mitochondrion	81.11	83.78
PGSC0003DMT400001262	Potato	cytosol	66.2	83.04
GSMUA_Achr6P36990_001	Banana	mitochondrion	36.38	82.43
Os04t0508200-01	Rice	plasma membrane, plastid	78.13	82.22
TraesCS2B01G381500.1	Wheat	mitochondrion	76.94	81.3
TraesCS2A01G363500.1	Wheat	mitochondrion	76.74	81.09
TraesCS2D01G361100.1	Wheat	mitochondrion	76.54	80.88
HORVU2Hr1G087970.8	Barley	cytosol	61.43	77.83
Zm00001d044021_P001	Maize	extracellular	61.63	75.24
KRH56574	Soybean	nucleus	70.18	75.11
Zm00001d011487_P001	Maize	extracellular	61.43	75.0
Zm00001d039079_P002	Maize	plasma membrane	60.64	73.49
Solyc02g086610.2.1	Tomato	plastid	68.39	73.04
CDX78585	Canola	mitochondrion, plastid	69.58	72.16
CDX70573	Canola	mitochondrion, plastid	68.39	71.22
Bra006262.1-P	Field mustard	mitochondrion, plastid	68.19	71.01
GSMUA_Achr2P23210_001	Banana	mitochondrion, plastid	69.38	70.94
AT5G14590.1	Thale cress	mitochondrion, plastid	68.19	70.72
VIT_14s0066g00950.t01	Wine grape	mitochondrion	67.4	69.75
KRG93238	Soybean	cytosol	28.43	61.9
GSMUA_Achr5P00030_001	Banana	cytosol	9.15	61.33
Zm00001d046262_P001	Maize	cytosol	30.02	50.67
Zm00001d021770_P012	Maize	plastid	11.93	28.99

Protein Annotations

KEGG:00020+1.1.1.42	KEGG:00480+1.1.1.42	KEGG:00720+1.1.1.42	Gene3D:3.40.718.10	MapMan:50.1.1	UniProt:A0A1D6E6B4
GO:GO:0003674	GO:GO:0003824	GO:GO:0004450	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0006091	GO:GO:0006099	GO:GO:0006102
GO:GO:0008150	GO:GO:0008152	GO:GO:0009507	GO:GO:0009534	GO:GO:0009536	GO:GO:0009570
GO:GO:0009579	GO:GO:0009987	GO:GO:0016491	GO:GO:0016616	GO:GO:0046872	GO:GO:0055114
InterPro:IsoPropMal-DH-like_dom	InterPro:Isocitrate_DH_NADP	ProteinID:ONM16007.1	PFAM:PF00180	PIRSF:PIRSF000108	PANTHER:PTHR11822
PANTHER:PTHR11822:SF5	SMART:SM01329	SUPFAM:SSF53659	TIGRFAMs:TIGR00127	UniParc:UPI000843CD1A	EnsemblPlantsGene:Zm00001d003083
EnsemblPlants:Zm00001d003083_P002	EnsemblPlants:Zm00001d003083_T002	SEG:seg	:	:	:

Description

Isocitrate dehydrogenase

Coordinates

chr2:-:31519654..31526365

Molecular Weight (calculated)

56087.6 Da

IEP (calculated)

8.188

GRAVY (calculated)

-0.179

Length

503 amino acids

Sequence
(BLAST)

001: MRNLLLPRCL LSAPTTMARA SVSGSAAVAK ALIPLNPASG GRLPSLLPAR LHVPGSSRVL RGASLRCYAA AAAAVAEQSR IKVQNPIVEM DGDEMTRVIW
101: KMIKDKLIFP YLELDVKYYD LGILNRDATN DEVTVESAEA TLKYNVAVKC ATITPDETRV KEFKLKSMWR SPNGTIRNIL NASIPWQGLF FVSPSCVKTS
201: QESFLVSWKK PICIGRHAFG DQYRATDMII NGPGKLKMVF VPDGADPMEL DVYDFKGPGV ALSMYNVDES IRAFAESSMA MALSKKWPLY LSTKNTILKK
301: YDGRFKDIFQ EVYEEQWKEK FEENSIWYEH RLIDDMVAYA VKSDGGYVWA CKNYDGDVQS DFLAQGLLKF PSCFGSLGLM TSVLLSSDGK TLEAEAAHGT
401: VTRHFRLHQK GQETSTNSIA SIFAWTRGLE HRAKLDKNDS LLDFTHKLES ACVETVESGK MTKDLALLIH GPKVTREFYL STEEFIDAVA QQLRGKIQLP
501: TTV

Best Arabidopsis Sequence Match ( AT5G14590.1 )
(BLAST)

001: MLNKLTHGVF TYRASLTAML SSSTSAGLSS SFVSSRFLSS GIFSSGASRN RVTFPVQFHR ASAVRCFASS GGSDRIQVQN PIVEMDGDEM TRVIWSMIKE
101: KLILPYLDLD IKYFDLGILN RDATDDKVTV ESAEAALKYN VAIKCATITP DEGRVKEFGL KSMWRSPNGT IRNILDGTVF REPIMCSNIP RLVPGWEKPI
201: CIGRHAFGDQ YRATDTVIKG PGKLKMVFVP EDGNAPVELD VYDFKGPGVA LAMYNVDESI RAFAESSMAM ALTKKWPLYL STKNTILKKY DGRFKDIFQE
301: VYEANWKQKF EEHSIWYEHR LIDDMVAYAV KSEGGYVWAC KNYDGDVQSD LLAQGFGSLG LMTSVLLSAD GKTLESEAAH GTVTRHFRLH QKGQETSTNS
401: IASIFAWTRG LEHRAKLDKN EKLMDFVKKL ESSCVNTVET GKMTKDLALL IHGPKVSRDL FLNTEEFIDA VASKLKTQFK ELPLV

Arabidopsis Description

Isocitrate dehydrogenase [NADP], chloroplastic/mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q8LPJ5]
SUBAcon: [mitochondrion,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.