Factsheet for Zm00001d044021_P001

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

cytosol 2
mitochondrion 1
cytoskeleton 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytoskeleton
YLoc:	cytosol

extracellular: 20408568

msms PMID: 20408568 doi

W Ma, N Muthreich, C Liao, M Franz-Wachtel, W Schütz, F Zhang, F Hochholdinger, C Li

Department of Plant Nutrition, China Agricultural University, Beijing, PR China.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
OQU87253	Sorghum	cytoskeleton, cytosol, peroxisome	98.79	98.79
Zm00001d011487_P001	Maize	extracellular	98.3	98.3
Os01t0654500-01	Rice	extracellular, plasma membrane, plastid	96.84	96.84
TraesCS3A01G237100.1	Wheat	golgi	91.75	92.42
Zm00001d039079_P002	Maize	plasma membrane	92.96	92.29
TraesCS3B01G265700.1	Wheat	mitochondrion, peroxisome	92.23	84.26
TraesCS3D01G237500.1	Wheat	plastid	92.23	84.26
HORVU3Hr1G059060.2	Barley	mitochondrion	92.23	80.34
Zm00001d046262_P001	Maize	cytosol	45.87	63.42
Zm00001d003083_P002	Maize	mitochondrion	75.24	61.63
Zm00001d021770_P012	Maize	plastid	14.81	29.47

Protein Annotations

KEGG:00020+1.1.1.42	KEGG:00480+1.1.1.42	KEGG:00720+1.1.1.42	EntrezGene:100217128	Gene3D:3.40.718.10	MapMan:50.1.1
UniProt:B4FLJ3	EMBL:BT037981	GO:GO:0000166	GO:GO:0000287	GO:GO:0003674	GO:GO:0003824
GO:GO:0004450	GO:GO:0005488	GO:GO:0006091	GO:GO:0006099	GO:GO:0006102	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016491	GO:GO:0016616	GO:GO:0046872	GO:GO:0051287
GO:GO:0055114	InterPro:IsoCit/isopropylmalate_DH_CS	InterPro:IsoPropMal-DH-like_dom	InterPro:Isocitrate_DH_NADP	ProteinID:ONM39695.1	PFAM:PF00180
PIRSF:PIRSF000108	ScanProsite:PS00470	PANTHER:PTHR11822	PANTHER:PTHR11822:SF24	SMART:SM01329	SUPFAM:SSF53659
TIGRFAMs:TIGR00127	UniParc:UPI00017B6B03	EnsemblPlantsGene:Zm00001d044021	EnsemblPlants:Zm00001d044021_P001	EnsemblPlants:Zm00001d044021_T001	:

Description

Isocitrate dehydrogenase

Coordinates

chr3:+:216967820..216972096

Molecular Weight (calculated)

46100.2 Da

IEP (calculated)

7.049

GRAVY (calculated)

-0.231

Length

412 amino acids

Sequence
(BLAST)

001: MAFEKIKVSN PIVEMDGDEM TRVFWQSIKD KLIFPFLDLD IKYYDLGILH RDATDDKVTV EAAEATLKYN VAIKCATITP DETRVKEFNL KHMWKSPNGT
101: IRNIINGTVF REPIICKNVP RLVPGWTKPI CIGRHAFGDQ YRATDAVLKG PGKLKLVFEG KEEQIDLEVF NFTGAGGVAL SMYNTDESIR AFAAASMTTA
201: YEKKWPLYLS TKNTILKKYD GRFKDIFQEV YEADWKSKFE AAGIWYEHRL IDDMVAYALK SEGGYVWACK NYDGDVQSDF LAQGFGSLGL MTSVLVCPDG
301: KTIEAEAAHG TVTRHFRVHQ KGGETSTNSI ASIFAWTRGL AHRAKLDDNA RLLDFALKLE AACVGAVESG KMTKDLALLV HGSSKVTRSH YLNTEEFIDA
401: VATELRSRLG AN

Best Arabidopsis Sequence Match ( AT1G65930.1 )
(BLAST)

001: MAFEKIKVAN PIVEMDGDEM TRVIWKSIKD KLITPFVELD IKYFDLGLPH RDATDDKVTI ESAEATKKYN VAIKCATITP DEGRVTEFGL KQMWRSPNGT
101: IRNILNGTVF REPIICKNVP KLVPGWTKPI CIGRHAFGDQ YRATDAVIKG PGKLTMTFEG KDGKTETEVF TFTGEGGVAM AMYNTDESIR AFADASMNTA
201: YEKKWPLYLS TKNTILKKYD GRFKDIFQEV YEASWKSKYD AAGIWYEHRL IDDMVAYALK SEGGYVWACK NYDGDVQSDF LAQGFGSLGL MTSVLVCPDG
301: KTIEAEAAHG TVTRHFRVHQ KGGETSTNSI ASIFAWTRGL AHRAKLDDNA KLLDFTEKLE AACVGTVESG KMTKDLALII HGSKLSRDTY LNTEEFIDAV
401: AAELKERLNA

Arabidopsis Description

CICDHIsocitrate dehydrogenase [NADP] [Source:UniProtKB/TrEMBL;Acc:A0A178W7K0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.