Factsheet for Zm00001d039079_P002

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

cytosol 2
peroxisome 1
cytoskeleton 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	cytosol, peroxisome
MultiLoc:	cytosol
PProwler:	peroxisome
WoLF PSORT:	cytoskeleton
YLoc:	cytosol

extracellular: 20408568
plasma membrane: 23508561
mitochondrion: 27297264
plasma membrane: 27341663

msms PMID: 27297264 doi

D Dahal, KJ Newton, BP Mooney

Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.

msms PMID: 27341663 doi

P Voothuluru, JC Anderson, RE Sharp, SC Peck

Bond Life Sciences Center, University of Missouri, Columbia, MO, 65211, USA., Division of Biochemistry, University of Missouri, Columbia, MO, 65211, USA., Division of Plant Sciences, University of Missouri, Columbia, MO, 65211, USA., Interdisciplinary Plant Group, University of Missouri, Columbia, MO, 65211, USA.

msms PMID: 20408568 doi

W Ma, N Muthreich, C Liao, M Franz-Wachtel, W Schütz, F Zhang, F Hochholdinger, C Li

Department of Plant Nutrition, China Agricultural University, Beijing, PR China.

msms PMID: 23508561 doi

Z Zhang, P Voothuluru, M Yamaguchi, RE Sharp, SC Peck

Division of Biochemistry, University of Missouri Columbia, MO, USA ; Christopher S. Bond Life Sciences Center, University of Missouri Columbia, MO, USA ; Interdisciplinary Plant Group, University of Missouri Columbia, MO, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
OQU78460	Sorghum	cytosol	97.83	97.83
Os05t0573200-00	Rice	cytoskeleton, cytosol, peroxisome	93.73	94.42
Zm00001d044021_P001	Maize	extracellular	92.29	92.96
Zm00001d011487_P001	Maize	extracellular	91.08	91.75
Zm00001d046262_P001	Maize	cytosol	49.16	68.46
Zm00001d003083_P002	Maize	mitochondrion	73.49	60.64
Zm00001d021770_P012	Maize	plastid	13.98	28.02

Protein Annotations

KEGG:00020+1.1.1.42	KEGG:00480+1.1.1.42	KEGG:00720+1.1.1.42	EntrezGene:100272371	Gene3D:3.40.718.10	MapMan:50.1.1
ProteinID:AQK88693.1	EMBL:BT066196	EMBL:BT067378	UniProt:C0PD27	ncoils:Coil	GO:GO:0000166
GO:GO:0000287	GO:GO:0003674	GO:GO:0003824	GO:GO:0004450	GO:GO:0005488	GO:GO:0006091
GO:GO:0006099	GO:GO:0006102	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016491
GO:GO:0016616	GO:GO:0046872	GO:GO:0051287	GO:GO:0055114	InterPro:IsoCit/isopropylmalate_DH_CS	InterPro:IsoPropMal-DH-like_dom
InterPro:Isocitrate_DH_NADP	PFAM:PF00180	PIRSF:PIRSF000108	ScanProsite:PS00470	PANTHER:PTHR11822	PANTHER:PTHR11822:SF24
SMART:SM01329	SUPFAM:SSF53659	TIGRFAMs:TIGR00127	UniParc:UPI000194B0A7	EnsemblPlantsGene:Zm00001d039079	EnsemblPlants:Zm00001d039079_P002
EnsemblPlants:Zm00001d039079_T002	:	:	:	:	:

Description

isocitrate dehydrogenase2 isocitrate dehydrogenase2

Coordinates

chr6:+:169685197..169688921

Molecular Weight (calculated)

46226.1 Da

IEP (calculated)

6.678

GRAVY (calculated)

-0.238

Length

415 amino acids

Sequence
(BLAST)

001: MAFNKIKVSN PVVEMDGDEM TRVFWKSIKD KLIFPFVDLD IKYFDLGLPH RDATDDKVTV EAAEATLKYN VAIKCATITP DEARVNEFGL KAMWKSPNGT
101: IRNILNGTVF REPIICKNIP RLVPGWTKPI CIGRHAFGDQ YRATDAVIKG PGKLKLVFEG KEEQVELEVF NFTGAGGVAL SMYNTDESIH AFADASMATA
201: YEKKWPLYLS TKNTILKKYD GRFKDIFQEV YEAGWKTKFE AAGIWYEHRL IDDMVAYALK SEGGYVWACK NYDGDVQSDF LAQGFGSLGL MTSVLVCPDG
301: KTIEAEAAHG TVTRHYRVHQ KGGETSTNSI ASIFAWTRGL AHRAKLDDNA RLLDFTQKLE AACVGAVESG KMTKDLALLV HGSSNITRSH YLNTEEFIDA
401: VADELRSRLA ANSNL

Best Arabidopsis Sequence Match ( AT1G65930.1 )
(BLAST)

001: MAFEKIKVAN PIVEMDGDEM TRVIWKSIKD KLITPFVELD IKYFDLGLPH RDATDDKVTI ESAEATKKYN VAIKCATITP DEGRVTEFGL KQMWRSPNGT
101: IRNILNGTVF REPIICKNVP KLVPGWTKPI CIGRHAFGDQ YRATDAVIKG PGKLTMTFEG KDGKTETEVF TFTGEGGVAM AMYNTDESIR AFADASMNTA
201: YEKKWPLYLS TKNTILKKYD GRFKDIFQEV YEASWKSKYD AAGIWYEHRL IDDMVAYALK SEGGYVWACK NYDGDVQSDF LAQGFGSLGL MTSVLVCPDG
301: KTIEAEAAHG TVTRHFRVHQ KGGETSTNSI ASIFAWTRGL AHRAKLDDNA KLLDFTEKLE AACVGTVESG KMTKDLALII HGSKLSRDTY LNTEEFIDAV
401: AAELKERLNA

Arabidopsis Description

CICDHIsocitrate dehydrogenase [NADP] [Source:UniProtKB/TrEMBL;Acc:A0A178W7K0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.