CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
peroxisome 1
cytoskeleton 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytoskeleton, cytosol, peroxisome
BaCelLo:	cytosol
MultiLoc:	cytosol
PProwler:	peroxisome
WoLF PSORT:	cytoskeleton
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d039079_P002	Maize	plasma membrane	97.83	97.83
Os05t0573200-00	Rice	cytoskeleton, cytosol, peroxisome	94.7	95.39
OQU87253	Sorghum	cytoskeleton, cytosol, peroxisome	91.81	92.48
EES11093	Sorghum	mitochondrion	76.39	65.09

Protein Annotations

KEGG:00020+1.1.1.42	KEGG:00480+1.1.1.42	KEGG:00720+1.1.1.42	Gene3D:3.40.718.10	MapMan:50.1.1	UniProt:A0A1Z5R408
GO:GO:0000166	GO:GO:0000287	GO:GO:0003674	GO:GO:0003824	GO:GO:0004450	GO:GO:0005488
GO:GO:0006091	GO:GO:0006099	GO:GO:0006102	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016491	GO:GO:0016616	GO:GO:0046872	GO:GO:0051287	GO:GO:0055114	InterPro:IsoCit/isopropylmalate_DH_CS
InterPro:IsoPropMal-DH-like_dom	InterPro:Isocitrate_DH_NADP	EnsemblPlants:OQU78460	ProteinID:OQU78460	ProteinID:OQU78460.1	PFAM:PF00180
PIRSF:PIRSF000108	ScanProsite:PS00470	PANTHER:PTHR11822	PANTHER:PTHR11822:SF24	SMART:SM01329	EnsemblPlantsGene:SORBI_3009G238900
SUPFAM:SSF53659	TIGRFAMs:TIGR00127	UniParc:UPI0008611F64	:	:	:

Description

hypothetical protein

Coordinates

chr9:+:57680872..57684861

Molecular Weight (calculated)

46306.3 Da

IEP (calculated)

6.433

GRAVY (calculated)

-0.234

Length

415 amino acids

Sequence
(BLAST)

001: MAFNKIQVAN PVVEMDGDEM TRVFWKSIKD KLIFPFVDLD IKYFDLGLPY RDETDDKVTV EAAEATLKYN VAIKCATITP DEARVKEFGL KAMWKSPNGT
101: IRNILNGTVF REPIICKNIP RLVPGWTKPI CIGRHAFGDQ YRATDAVIKG PGKLKLVFEG KEEQVELEVF NFTGAGGVAL SMYNTDESIH AFAEASMATA
201: YEKKWPLYLS TKNTILKKYD GRFKDIFQEV YEAGWKTKFE AAGIWYEHRL IDDMVAYALK SEGGYVWACK NYDGDVQSDF LAQGFGSLGL MTSVLVCPDG
301: KTIEAEAAHG TVTRHYRVHQ KGGETSTNSI ASIFAWTRGL AHRAKLDDNA RLLDFTQKLE AACIGAVESG KMTKDLALLV HGSANVTRSH YLNTEEFIDA
401: VADELRSRLA ANSNL

Best Arabidopsis Sequence Match ( AT1G65930.1 )
(BLAST)

001: MAFEKIKVAN PIVEMDGDEM TRVIWKSIKD KLITPFVELD IKYFDLGLPH RDATDDKVTI ESAEATKKYN VAIKCATITP DEGRVTEFGL KQMWRSPNGT
101: IRNILNGTVF REPIICKNVP KLVPGWTKPI CIGRHAFGDQ YRATDAVIKG PGKLTMTFEG KDGKTETEVF TFTGEGGVAM AMYNTDESIR AFADASMNTA
201: YEKKWPLYLS TKNTILKKYD GRFKDIFQEV YEASWKSKYD AAGIWYEHRL IDDMVAYALK SEGGYVWACK NYDGDVQSDF LAQGFGSLGL MTSVLVCPDG
301: KTIEAEAAHG TVTRHFRVHQ KGGETSTNSI ASIFAWTRGL AHRAKLDDNA KLLDFTEKLE AACVGTVESG KMTKDLALII HGSKLSRDTY LNTEEFIDAV
401: AAELKERLNA

Arabidopsis Description

CICDHIsocitrate dehydrogenase [NADP] [Source:UniProtKB/TrEMBL;Acc:A0A178W7K0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.