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Rice
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Rice
Subcellular Localization
min:
: max

 
Winner_takes_all: peroxisome, cytoskeleton, cytosol

Predictor Summary:
  • cytosol 3
  • vacuole 1
  • mitochondrion 2
  • plastid 1
  • cytoskeleton 1
  • peroxisome 1
Predictors GFP MS/MS Papers
Winner Takes All:cytoskeleton, cytosol, peroxisome
Any Predictor:cytoskeleton, cytosol, mitochondrion, peroxisome, plastid, vacuole
BaCelLo:cytosol
EpiLoc:vacuole
MultiLoc:cytosol
Plant-mPloc:cytosol, mitochondrion, plastid
PProwler:mitochondrion
WoLF PSORT:cytoskeleton
YLoc:peroxisome
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
OQU78460 Sorghum cytosol 95.39 94.7
Zm00001d039079_P002 Maize plasma membrane 94.42 93.73
Os01t0654500-01 Rice extracellular, plasma membrane, plastid 92.72 92.72
Os01t0248400-01 Rice plasma membrane 85.19 84.78
Os04t0508200-01 Rice plasma membrane, plastid 79.37 68.41
Protein Annotations
KEGG:00020+1.1.1.42KEGG:00480+1.1.1.42KEGG:00720+1.1.1.42Gene3D:3.40.718.10EntrezGene:4339674MapMan:50.1.1
ProteinID:AAU44104.1ProteinID:BAF18295.1ProteinID:BAS95446.1ProteinID:EEE64768.1GO:GO:0000166GO:GO:0000287
GO:GO:0003674GO:GO:0003824GO:GO:0004450GO:GO:0005488GO:GO:0006091GO:GO:0006099
GO:GO:0006102GO:GO:0008150GO:GO:0008152GO:GO:0009987GO:GO:0016491GO:GO:0016616
GO:GO:0046872GO:GO:0051287GO:GO:0055114InterPro:IsoCit/isopropylmalate_DH_CSInterPro:IsoPropMal-DH-like_domInterPro:Isocitrate_DH_NADP
EnsemblPlantsGene:Os05g0573200EnsemblPlants:Os05t0573200-00PFAM:PF00180PIRSF:PIRSF000108ScanProsite:PS00470PANTHER:PTHR11822
PANTHER:PTHR11822:SF24UniProt:Q65XK3SMART:SM01329SUPFAM:SSF53659TIGRFAMs:TIGR00127UniParc:UPI000009FF03
RefSeq:XP_015640220.1:::::
Description
Similar to Isocitrate dehydrogenase (Fragment). (Os05t0573200-00)
Coordinates
chr5:+:28547571..28551291
Molecular Weight (calculated)
46146.0 Da
IEP (calculated)
6.720
GRAVY (calculated)
-0.295
Length
412 amino acids
Sequence
(BLAST)
001: MASTKIKVAN PIVEMDGDEM TRVFWKSIKD KLIFPFLELD IKYFDLGLPY RDQTDDKVTV EAAEATLKYN VAIKCATITP DEARVKEFSL KSMWKSPNGT
101: IRNILNGTVF REPIICKNIP RLVPGWTKPI CIGRHAFGDQ YRATDAVIKG PGKLKLVYEG KDEEIELEVF NFTGAGGVAQ SMYNTDESIR SFAEASMATA
201: YEKKWPLYLS TKNTILKKYD GRFKDIFQEV YEAQWKSKFE AAGIWYEHRL IDDMVAYALK SEGGYVWACK NYDGDVQSDF LAQGFGSLGL MTSVLVCPDG
301: KTIEAEAAHG TVTRHYRVHQ KGGETSTNSI ASIFAWTRGL AHRAKLDDNA RLLDFTQKLE AACIGAVESG KMTKDLALLV HGSSNVTRSH YLNTEEFIDA
401: VADELRSRLA AN
Best Arabidopsis Sequence Match ( AT1G65930.1 )
(BLAST)
001: MAFEKIKVAN PIVEMDGDEM TRVIWKSIKD KLITPFVELD IKYFDLGLPH RDATDDKVTI ESAEATKKYN VAIKCATITP DEGRVTEFGL KQMWRSPNGT
101: IRNILNGTVF REPIICKNVP KLVPGWTKPI CIGRHAFGDQ YRATDAVIKG PGKLTMTFEG KDGKTETEVF TFTGEGGVAM AMYNTDESIR AFADASMNTA
201: YEKKWPLYLS TKNTILKKYD GRFKDIFQEV YEASWKSKYD AAGIWYEHRL IDDMVAYALK SEGGYVWACK NYDGDVQSDF LAQGFGSLGL MTSVLVCPDG
301: KTIEAEAAHG TVTRHFRVHQ KGGETSTNSI ASIFAWTRGL AHRAKLDDNA KLLDFTEKLE AACVGTVESG KMTKDLALII HGSKLSRDTY LNTEEFIDAV
401: AAELKERLNA
Arabidopsis Description
CICDHIsocitrate dehydrogenase [NADP] [Source:UniProtKB/TrEMBL;Acc:A0A178W7K0]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.