Factsheet for Os04t0508200-01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, plastid

Predictor Summary:

plastid 4
mitochondrion 6
cytosol 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane, plastid
Any Predictor:	cytosol, mitochondrion, plastid, secretory
BaCelLo:	plastid
EpiLoc:	plastid
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
Plant-mPloc:	cytosol, mitochondrion, plastid
Predotar:	secretory
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	mitochondrion

plastid: 17189339
plasma membrane: 27800704

msms PMID: 27800704 doi

J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu

Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

msms PMID: 17189339 doi

T Kleffmann, A von Zychlinski, D Russenberger, M Hirsch-Hoffmann, P Gehrig, W Gruissem, S Baginsky

Institute of Plant Sciences, Eidgenössische Technische Hochschule Zurich, 8092 Zurich, Switzerland.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr6P36990_001	Banana	mitochondrion	41.0	88.29
TraesCS2B01G381500.1	Wheat	mitochondrion	86.61	86.97
TraesCS2D01G361100.1	Wheat	mitochondrion	86.19	86.55
TraesCS2A01G363500.1	Wheat	mitochondrion	85.98	86.34
PGSC0003DMT400001262	Potato	cytosol	71.97	85.79
HORVU2Hr1G087970.8	Barley	cytosol	68.62	82.62
EES11093	Sorghum	mitochondrion	82.64	81.11
Os05t0573200-00	Rice	cytoskeleton, cytosol, peroxisome	68.41	79.37
Os01t0654500-01	Rice	extracellular, plasma membrane, plastid	67.78	78.64
KRH56574	Soybean	nucleus	77.2	78.51
Zm00001d003083_P002	Maize	mitochondrion	82.22	78.13
Solyc02g086610.2.1	Tomato	plastid	75.1	76.22
Os01t0248400-01	Rice	plasma membrane	65.9	76.09
GSMUA_Achr2P23210_001	Banana	mitochondrion, plastid	76.78	74.59
CDX70573	Canola	mitochondrion, plastid	74.48	73.71
Bra006262.1-P	Field mustard	mitochondrion, plastid	74.48	73.71
CDX78585	Canola	mitochondrion, plastid	74.69	73.61
AT5G14590.1	Thale cress	mitochondrion, plastid	74.69	73.61
VIT_14s0066g00950.t01	Wine grape	mitochondrion	74.69	73.46
KRG93238	Soybean	cytosol	33.89	70.13
GSMUA_Achr5P00030_001	Banana	cytosol	9.41	60.0

Protein Annotations

KEGG:00020+1.1.1.42	KEGG:00480+1.1.1.42	KEGG:00720+1.1.1.42	Gene3D:3.40.718.10	EntrezGene:4336353	MapMan:50.1.1
EMBL:AK070042	ProteinID:BAF15183.1	ProteinID:BAS90008.1	GO:GO:0000166	GO:GO:0000287	GO:GO:0003674
GO:GO:0003824	GO:GO:0004450	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005739	GO:GO:0006091	GO:GO:0006099	GO:GO:0006102	GO:GO:0008150
GO:GO:0008152	GO:GO:0009507	GO:GO:0009534	GO:GO:0009536	GO:GO:0009570	GO:GO:0009579
GO:GO:0009987	GO:GO:0016491	GO:GO:0016616	GO:GO:0046872	GO:GO:0051287	GO:GO:0055114
InterPro:IsoCit/isopropylmalate_DH_CS	InterPro:IsoPropMal-DH-like_dom	InterPro:Isocitrate_DH_NADP	EnsemblPlantsGene:Os04g0508200	EnsemblPlants:Os04t0508200-01	PFAM:PF00180
PIRSF:PIRSF000108	ScanProsite:PS00470	PANTHER:PTHR11822	PANTHER:PTHR11822:SF5	UniProt:Q0JBV4	SMART:SM01329
SUPFAM:SSF53659	TIGRFAMs:TIGR00127	UniParc:UPI0000DD917E	RefSeq:XP_015633401.1	SEG:seg	:

Description

Isocitrate/isopropylmalate dehydrogenase domain containing protein. (Os04t0508200-01)

Coordinates

chr4:+:25389649..25395401

Molecular Weight (calculated)

53560.6 Da

IEP (calculated)

8.593

GRAVY (calculated)

-0.244

Length

478 amino acids

Sequence
(BLAST)

001: MRHLLLLRCG MAPLYGSSSS AAATKALLLN PAAAHAFVPS SPGPRALRRG GASLRCYAAA AAAVAEQHRI KVHNPIVEMD GDEMTRVIWK MIKDKLIFPY
101: LELDVKYFDL GLLNRDATDD KVTVESAEAT LEYNVAVKCA TITPDETRVK EFKLKSMWRS PNGTIRNILN GTVFREPILC KNVPRILSGW KKPICIGRHA
201: FGDQYRATDT IINGPGKLKM VFVPDGAEPV ELNVYNFKGP GVALSMYNVD ESIRAFAESS MAMALSKKWP LYLSTKNTIL KKYDGRFKDI FQEVYEEKWK
301: EKFEENSIWY EHRLIDDMVA YAVKSEGGYV WACKNYDGDV QSDFLAQGFG SLGLMSSVLL SSDGKTLEAE AAHGTVTRHF RLHQKGQETS TNSIASIFAW
401: TRGLEHRAKL DKNDRLLDFT KKLESACIET VESGKMTKDL ALLIHGPKVT REFYLNTEEF IDAVAQQLRE KIQIPAVV

Best Arabidopsis Sequence Match ( AT5G14590.1 )
(BLAST)

001: MLNKLTHGVF TYRASLTAML SSSTSAGLSS SFVSSRFLSS GIFSSGASRN RVTFPVQFHR ASAVRCFASS GGSDRIQVQN PIVEMDGDEM TRVIWSMIKE
101: KLILPYLDLD IKYFDLGILN RDATDDKVTV ESAEAALKYN VAIKCATITP DEGRVKEFGL KSMWRSPNGT IRNILDGTVF REPIMCSNIP RLVPGWEKPI
201: CIGRHAFGDQ YRATDTVIKG PGKLKMVFVP EDGNAPVELD VYDFKGPGVA LAMYNVDESI RAFAESSMAM ALTKKWPLYL STKNTILKKY DGRFKDIFQE
301: VYEANWKQKF EEHSIWYEHR LIDDMVAYAV KSEGGYVWAC KNYDGDVQSD LLAQGFGSLG LMTSVLLSAD GKTLESEAAH GTVTRHFRLH QKGQETSTNS
401: IASIFAWTRG LEHRAKLDKN EKLMDFVKKL ESSCVNTVET GKMTKDLALL IHGPKVSRDL FLNTEEFIDA VASKLKTQFK ELPLV

Arabidopsis Description

Isocitrate dehydrogenase [NADP], chloroplastic/mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q8LPJ5]
SUBAcon: [mitochondrion,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.