Factsheet for Os01t0654500-01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, plastid, extracellular

Predictor Summary:

cytosol 4
vacuole 1
mitochondrion 2
peroxisome 2
plastid 1

Predictors

GFP

MS/MS

Papers

extracellular: 19038476
plasma membrane: 27800704
plastid: 27992503

msms PMID: 27800704 doi

J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu

Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

msms PMID: 27992503 doi

S Xing, X Meng, L Zhou, H Mujahid, C Zhao, Y Zhang, C Wang, Z Peng

Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, Mississippi, United States of America., Institute of Food Crops, Jiangsu Academy of Agricultural Sciences, Jiangsu High Quality Rice Research and Development Center, Nanjing Branch of China National Center for Rice Improvement, Nanjing, Jiangsu, China.

msms PMID: 19038476 doi

XY Chen, ST Kim, WK Cho, Y Rim, S Kim, SW Kim, KY Kang, ZY Park, JY Kim

Division of Applied Life Science (BK21 Program), Gyeongsang National University, Jinju 660-701, Republic of Korea.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
OQU87253	Sorghum	cytoskeleton, cytosol, peroxisome	97.33	97.33
Zm00001d044021_P001	Maize	extracellular	96.84	96.84
Zm00001d011487_P001	Maize	extracellular	96.36	96.36
TraesCS3A01G237100.1	Wheat	golgi	92.72	93.4
Os05t0573200-00	Rice	cytoskeleton, cytosol, peroxisome	92.72	92.72
TraesCS3B01G265700.1	Wheat	mitochondrion, peroxisome	93.45	85.37
TraesCS3D01G237500.1	Wheat	plastid	93.45	85.37
Os01t0248400-01	Rice	plasma membrane	85.19	84.78
HORVU3Hr1G059060.2	Barley	mitochondrion	93.45	81.4
Os04t0508200-01	Rice	plasma membrane, plastid	78.64	67.78

Protein Annotations

KEGG:00020+1.1.1.42	KEGG:00480+1.1.1.42	KEGG:00720+1.1.1.42	Gene3D:3.40.718.10	EntrezGene:4324176	MapMan:50.1.1
EMBL:AK061752	ProteinID:BAB90451.1	ProteinID:BAD72316.1	ProteinID:BAF05663.1	ProteinID:BAS73485.1	ProteinID:EAZ12940.1
EMBL:EU267967	GO:GO:0000166	GO:GO:0000287	GO:GO:0003674	GO:GO:0003824	GO:GO:0004450
GO:GO:0005488	GO:GO:0006091	GO:GO:0006099	GO:GO:0006102	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016491	GO:GO:0016616	GO:GO:0046872	GO:GO:0051287	GO:GO:0055114
EMBL:GQ848053	InterPro:IsoCit/isopropylmalate_DH_CS	InterPro:IsoPropMal-DH-like_dom	InterPro:Isocitrate_DH_NADP	EnsemblPlantsGene:Os01g0654500	EnsemblPlants:Os01t0654500-01
PFAM:PF00180	PIRSF:PIRSF000108	ScanProsite:PS00470	PANTHER:PTHR11822	PANTHER:PTHR11822:SF24	UniProt:Q7F280
SMART:SM01329	SUPFAM:SSF53659	TIGRFAMs:TIGR00127	UniParc:UPI00000A271F	RefSeq:XP_015612407.1	:

Description

Similar to NADP-isocitrate dehydrogenase. (Os01t0654500-01)

Coordinates

chr1:-:26533072..26537108

Molecular Weight (calculated)

46045.1 Da

IEP (calculated)

6.790

GRAVY (calculated)

-0.217

Length

412 amino acids

Sequence
(BLAST)

001: MAFEKIKVAN PIVEMDGDEM TRIFWQSIKD KLIFPFLDLD IKYYDLGVLH RDATDDKVTV EAAEATLKYN VAIKCATITP DEARVKEFNL KQMWKSPNGT
101: IRNIINGTVF REPIICKNVP RLVPGWTKPI CIGRHAFGDQ YRATDAVLKG PGKLKLVFEG KDEQIDLEVF NFTGAGGVAL SMYNTDESIR AFAEASMTTA
201: YEKKWPLYLS TKNTILKKYD GRFKDIFQEV YEAGWKSKFE AAGIWYEHRL IDDMVAYALK SEGGYVWACK NYDGDVQSDF LAQGFGSLGL MTSVLVCPDG
301: KTIEAEAAHG TVTRHFRVHQ KGGETSTNSI ASIFAWTRGL AHRAKLDDNA RLLDFALKLE AACVGTVESG KMTKDLALLI HGSSNVTRSH YLNTEEFIDA
401: VAAELRSRLA AN

Best Arabidopsis Sequence Match ( AT1G65930.1 )
(BLAST)

001: MAFEKIKVAN PIVEMDGDEM TRVIWKSIKD KLITPFVELD IKYFDLGLPH RDATDDKVTI ESAEATKKYN VAIKCATITP DEGRVTEFGL KQMWRSPNGT
101: IRNILNGTVF REPIICKNVP KLVPGWTKPI CIGRHAFGDQ YRATDAVIKG PGKLTMTFEG KDGKTETEVF TFTGEGGVAM AMYNTDESIR AFADASMNTA
201: YEKKWPLYLS TKNTILKKYD GRFKDIFQEV YEASWKSKYD AAGIWYEHRL IDDMVAYALK SEGGYVWACK NYDGDVQSDF LAQGFGSLGL MTSVLVCPDG
301: KTIEAEAAHG TVTRHFRVHQ KGGETSTNSI ASIFAWTRGL AHRAKLDDNA KLLDFTEKLE AACVGTVESG KMTKDLALII HGSKLSRDTY LNTEEFIDAV
401: AAELKERLNA

Arabidopsis Description

CICDHIsocitrate dehydrogenase [NADP] [Source:UniProtKB/TrEMBL;Acc:A0A178W7K0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.