Factsheet for TraesCS3A01G237100.1

Subcellular Localization

min:

: max

Winner_takes_all: golgi

Predictor Summary:

peroxisome 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi
Any Predictor:	peroxisome
MultiLoc:	peroxisome
PProwler:	peroxisome
WoLF PSORT:	peroxisome
YLoc:	peroxisome

extracellular: 19786127
golgi: 23128297
golgi: 25769308
unclear: 25769308

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

msms PMID: 19786127 doi

FJ Kong, A Oyanagi, S Komatsu

National Institute of Crop Science, Tsukuba 305-8518, Japan.

msms, gfp PMID: 23128297 doi

M Suliman, AL Chateigner-Boutin, M Francin-Allami, A Partier, B Bouchet, J Salse, C Pont, J Marion, H Rogniaux, D Tessier, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os01t0654500-01	Rice	extracellular, plasma membrane, plastid	93.4	92.72
OQU87253	Sorghum	cytoskeleton, cytosol, peroxisome	92.67	91.99
Zm00001d044021_P001	Maize	extracellular	92.42	91.75
Zm00001d011487_P001	Maize	extracellular	91.69	91.02
TraesCS3B01G265700.1	Wheat	mitochondrion, peroxisome	99.27	90.02
TraesCS3D01G237500.1	Wheat	plastid	99.27	90.02
HORVU3Hr1G059060.2	Barley	mitochondrion	98.78	85.41
TraesCS3A01G166600.1	Wheat	golgi, peroxisome	82.4	81.4
TraesCS2A01G363500.1	Wheat	mitochondrion	78.0	67.02

Protein Annotations

KEGG:00020+1.1.1.42	KEGG:00480+1.1.1.42	KEGG:00720+1.1.1.42	Gene3D:3.40.718.10	MapMan:50.1.1	GO:GO:0000166
GO:GO:0000287	GO:GO:0003674	GO:GO:0003824	GO:GO:0004450	GO:GO:0005488	GO:GO:0006102
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016616	GO:GO:0051287	GO:GO:0055114
InterPro:IsoCit/isopropylmalate_DH_CS	InterPro:IsoPropMal-DH-like_dom	InterPro:Isocitrate_DH_NADP	PFAM:PF00180	PIRSF:PIRSF000108	ScanProsite:PS00470
PANTHER:PTHR11822	PANTHER:PTHR11822:SF24	SMART:SM01329	SUPFAM:SSF53659	TIGRFAMs:TIGR00127	EnsemblPlantsGene:TraesCS3A01G237100
EnsemblPlants:TraesCS3A01G237100.1	:	:	:	:	:

Description

No Description!

Coordinates

chr3A:-:443118860..443122588

Molecular Weight (calculated)

45872.9 Da

IEP (calculated)

6.331

GRAVY (calculated)

-0.255

Length

409 amino acids

Sequence
(BLAST)

001: MAFEKIKVTN PIVEMDGDEM TRVFWQSIKD KLIFPFLDLD IKYFDLGVLH RDATDDKVTV EAAEATLKYN VAIKCATITP DEDRVKEFNL KQMWRSPNGT
101: IRNIINGTVF REPIICKNVP KLVPGWTKPI CIGRHAFGDQ YRATDAVLKG PGKLRLVFEG KDETVDLEVF NFTGAGGVAM AMYNTDESIR GFAEASMAIA
201: YEKKWPLYLS TKNTILKKYD GRFKDIFQEI YEAGWKSKYE AAGIWYEHRL IDDMVAYALK SEGGYVWACK NYDGDVQSDF LAQGFGSLGL MTSVLMCPDG
301: KTIEAEAAHG TVTRHFRVHQ KGGETSTNSI ASIFAWTRGL AHRAKLDENA RLLEFAQKLE EACVGTVESG KMTKDLALLV HGSSKVTRGD YLNTEEFIDA
401: VAAELKSRL

Best Arabidopsis Sequence Match ( AT1G65930.1 )
(BLAST)

001: MAFEKIKVAN PIVEMDGDEM TRVIWKSIKD KLITPFVELD IKYFDLGLPH RDATDDKVTI ESAEATKKYN VAIKCATITP DEGRVTEFGL KQMWRSPNGT
101: IRNILNGTVF REPIICKNVP KLVPGWTKPI CIGRHAFGDQ YRATDAVIKG PGKLTMTFEG KDGKTETEVF TFTGEGGVAM AMYNTDESIR AFADASMNTA
201: YEKKWPLYLS TKNTILKKYD GRFKDIFQEV YEASWKSKYD AAGIWYEHRL IDDMVAYALK SEGGYVWACK NYDGDVQSDF LAQGFGSLGL MTSVLVCPDG
301: KTIEAEAAHG TVTRHFRVHQ KGGETSTNSI ASIFAWTRGL AHRAKLDDNA KLLDFTEKLE AACVGTVESG KMTKDLALII HGSKLSRDTY LNTEEFIDAV
401: AAELKERLNA

Arabidopsis Description

CICDHIsocitrate dehydrogenase [NADP] [Source:UniProtKB/TrEMBL;Acc:A0A178W7K0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.