Factsheet for TraesCS3D01G237500.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 1
mitochondrion 4
peroxisome 2

Predictors

GFP

MS/MS

Papers

plastid: 22160430
plastid: 22736107
golgi: 25769308
unclear: 25769308

msms PMID: 22736107 doi

AH Kamal, K Cho, DE Kim, N Uozumi, KY Chung, SY Lee, JS Choi, SW Cho, CS Shin, SH Woo

Department of Crop Science, Chungbuk National University, 410 Seongbong-ro, Heungdeok-gu, Cheongju, Chungbuk 361-763, Korea.

msms PMID: 22160430 doi

AH Kamal, K Cho, S Komatsu, N Uozumi, JS Choi, SH Woo

Department of Crop Science, Chungbuk National University, 410 Seongbong-ro, Heungdeok-gu, Cheongju, Chungbuk, 361-763, Korea.

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3B01G265700.1	Wheat	mitochondrion, peroxisome	99.56	99.56
TraesCS3A01G237100.1	Wheat	golgi	90.02	99.27
Os01t0654500-01	Rice	extracellular, plasma membrane, plastid	85.37	93.45
OQU87253	Sorghum	cytoskeleton, cytosol, peroxisome	84.48	92.48
Zm00001d044021_P001	Maize	extracellular	84.26	92.23
Zm00001d011487_P001	Maize	extracellular	83.59	91.5
HORVU3Hr1G059060.2	Barley	mitochondrion	91.8	87.53
TraesCS3D01G175100.1	Wheat	peroxisome	75.17	81.88
TraesCS2D01G361100.1	Wheat	mitochondrion	72.95	69.12

Protein Annotations

KEGG:00020+1.1.1.42	KEGG:00480+1.1.1.42	KEGG:00720+1.1.1.42	Gene3D:3.40.718.10	MapMan:50.1.1	GO:GO:0000166
GO:GO:0000287	GO:GO:0003674	GO:GO:0003824	GO:GO:0004450	GO:GO:0005488	GO:GO:0006102
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016616	GO:GO:0051287	GO:GO:0055114
InterPro:IsoCit/isopropylmalate_DH_CS	InterPro:IsoPropMal-DH-like_dom	InterPro:Isocitrate_DH_NADP	PFAM:PF00180	PIRSF:PIRSF000108	ScanProsite:PS00470
PANTHER:PTHR11822	PANTHER:PTHR11822:SF24	SMART:SM01329	SUPFAM:SSF53659	TIGRFAMs:TIGR00127	EnsemblPlantsGene:TraesCS3D01G237500
EnsemblPlants:TraesCS3D01G237500.1	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr3D:-:328515428..328519307

Molecular Weight (calculated)

50577.5 Da

IEP (calculated)

8.125

GRAVY (calculated)

-0.333

Length

451 amino acids

Sequence
(BLAST)

001: MRWQSYSLRS LTSPSHHSRR LPHQPAPTRS RPPRQSASAA AAMAFEKIKV ANPIVEMDGD EMTRVFWQSI KDKLIFPFLD LDIKYFDLGV LHRDATDDKV
101: TVEAAEATLK YNVAIKCATI TPDEDRVKEF NLKQMWRSPN GTIRNIINGT VFREPIICKN VPKLVPGWTK PICIGRHAFG DQYRATDAVL KGPGKLRLVF
201: EGKDETVDLE VFNFTGAGGV AMAMYNTDES IRGFAEASMA IAYEKKWPLY LSTKNTILKK YDGRFKDIFQ EIYEAGWKSK YEAAGIWYEH RLIDDMVAYA
301: LKSEGGYVWA CKNYDGDVQS DFLAQGFGSL GLMTSVLMCP DGKTIEAEAA HGTVTRHFRV HQKGGETSTN SIASIFAWTR GLAHRAKLDE NARLLEFAQK
401: LEEACVGTVE SGKMTKDLAL LVHGSSKVTR SDYLNTEEFI DAVAAELKSR L

Best Arabidopsis Sequence Match ( AT1G65930.1 )
(BLAST)

001: MAFEKIKVAN PIVEMDGDEM TRVIWKSIKD KLITPFVELD IKYFDLGLPH RDATDDKVTI ESAEATKKYN VAIKCATITP DEGRVTEFGL KQMWRSPNGT
101: IRNILNGTVF REPIICKNVP KLVPGWTKPI CIGRHAFGDQ YRATDAVIKG PGKLTMTFEG KDGKTETEVF TFTGEGGVAM AMYNTDESIR AFADASMNTA
201: YEKKWPLYLS TKNTILKKYD GRFKDIFQEV YEASWKSKYD AAGIWYEHRL IDDMVAYALK SEGGYVWACK NYDGDVQSDF LAQGFGSLGL MTSVLVCPDG
301: KTIEAEAAHG TVTRHFRVHQ KGGETSTNSI ASIFAWTRGL AHRAKLDDNA KLLDFTEKLE AACVGTVESG KMTKDLALII HGSKLSRDTY LNTEEFIDAV
401: AAELKERLNA

Arabidopsis Description

CICDHIsocitrate dehydrogenase [NADP] [Source:UniProtKB/TrEMBL;Acc:A0A178W7K0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.