Factsheet for TraesCS2D01G361100.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 5
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	mitochondrion, plastid, secretory
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
Predotar:	secretory
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	mitochondrion

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2B01G381500.1	Wheat	mitochondrion	99.16	99.16
TraesCS2A01G363500.1	Wheat	mitochondrion	98.11	98.11
Os04t0508200-01	Rice	plasma membrane, plastid	86.55	86.19
GSMUA_Achr6P36990_001	Banana	mitochondrion	40.13	86.04
HORVU2Hr1G087970.8	Barley	cytosol	70.59	84.63
PGSC0003DMT400001262	Potato	cytosol	70.8	84.04
EES11093	Sorghum	mitochondrion	82.98	81.11
KRH56574	Soybean	nucleus	76.05	77.02
Zm00001d003083_P002	Maize	mitochondrion	80.88	76.54
TraesCS3D01G175100.1	Wheat	peroxisome	66.18	76.09
Solyc02g086610.2.1	Tomato	plastid	74.58	75.37
CDX78585	Canola	mitochondrion, plastid	75.42	74.02
CDX70573	Canola	mitochondrion, plastid	74.58	73.5
TraesCS3D01G237500.1	Wheat	plastid	69.12	72.95
Bra006262.1-P	Field mustard	mitochondrion, plastid	73.95	72.88
AT5G14590.1	Thale cress	mitochondrion, plastid	73.95	72.58
VIT_14s0066g00950.t01	Wine grape	mitochondrion	73.95	72.43
GSMUA_Achr2P23210_001	Banana	mitochondrion, plastid	74.58	72.15
KRG93238	Soybean	cytosol	32.56	67.1
GSMUA_Achr5P00030_001	Banana	cytosol	9.66	61.33

Protein Annotations

KEGG:00020+1.1.1.42	KEGG:00480+1.1.1.42	KEGG:00720+1.1.1.42	Gene3D:3.40.718.10	MapMan:50.1.1	GO:GO:0000166
GO:GO:0000287	GO:GO:0003674	GO:GO:0003824	GO:GO:0004450	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0006102	GO:GO:0008150
GO:GO:0008152	GO:GO:0009507	GO:GO:0009534	GO:GO:0009536	GO:GO:0009570	GO:GO:0009579
GO:GO:0009987	GO:GO:0016616	GO:GO:0051287	GO:GO:0055114	InterPro:IsoCit/isopropylmalate_DH_CS	InterPro:IsoPropMal-DH-like_dom
InterPro:Isocitrate_DH_NADP	PFAM:PF00180	PIRSF:PIRSF000108	ScanProsite:PS00470	PANTHER:PTHR11822	PANTHER:PTHR11822:SF5
SMART:SM01329	SUPFAM:SSF53659	SignalP:SignalP-noTM	TIGRFAMs:TIGR00127	EnsemblPlantsGene:TraesCS2D01G361100	EnsemblPlants:TraesCS2D01G361100.1
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr2D:+:463867426..463879831

Molecular Weight (calculated)

53523.5 Da

IEP (calculated)

8.433

GRAVY (calculated)

-0.272

Length

476 amino acids

Sequence
(BLAST)

001: MRHLLLPRRL LAMAPLSASA ATKALLLNPA RGRLPSSLAC LSAHGARSFR AASLRCYAAA AVAEQHRIKV NNPIVEMDGD EMTRVMWKMI KDKLIFPYLD
101: LDVKYFDLGV LNRDATDDKV TVESAEATLK YNVAVKCATI TPDETRVKEF KLKSMWRSPN GTIRNILNGT VFREPILCKN IPRILTGWKK PICIGRHAFG
201: DQYRATDMII NGPGKLKMVY VPDGAEPVEL NVYDFKGPGV ALAMYNVDES IRAFADSSMA MALSKKWPLY LSTKNTILKK YDGRFKDIFQ EVYEENWKEK
301: FEENSIWYEH RLIDDMVAYA VKSEGGYVWA CKNYDGDVQS DFLAQGFGSL GLMSSVLLSS DGKTLEAEAA HGTVTRHFRL HEKGQETSTN SIASIFAWTR
401: GLEHRAKLDN NDRLLDFTQK LESACVETVE SGKMTKDLAL LSHGTKVTRE HYLSTEEFID AVAQQLREKI QIPASL

Best Arabidopsis Sequence Match ( AT5G14590.1 )
(BLAST)

001: MLNKLTHGVF TYRASLTAML SSSTSAGLSS SFVSSRFLSS GIFSSGASRN RVTFPVQFHR ASAVRCFASS GGSDRIQVQN PIVEMDGDEM TRVIWSMIKE
101: KLILPYLDLD IKYFDLGILN RDATDDKVTV ESAEAALKYN VAIKCATITP DEGRVKEFGL KSMWRSPNGT IRNILDGTVF REPIMCSNIP RLVPGWEKPI
201: CIGRHAFGDQ YRATDTVIKG PGKLKMVFVP EDGNAPVELD VYDFKGPGVA LAMYNVDESI RAFAESSMAM ALTKKWPLYL STKNTILKKY DGRFKDIFQE
301: VYEANWKQKF EEHSIWYEHR LIDDMVAYAV KSEGGYVWAC KNYDGDVQSD LLAQGFGSLG LMTSVLLSAD GKTLESEAAH GTVTRHFRLH QKGQETSTNS
401: IASIFAWTRG LEHRAKLDKN EKLMDFVKKL ESSCVNTVET GKMTKDLALL IHGPKVSRDL FLNTEEFIDA VASKLKTQFK ELPLV

Arabidopsis Description

Isocitrate dehydrogenase [NADP], chloroplastic/mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q8LPJ5]
SUBAcon: [mitochondrion,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.