Factsheet for VIT_14s0066g00950.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 5
mitochondrion 7
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr6P36990_001	Banana	mitochondrion	40.33	88.29
PGSC0003DMT400001262	Potato	cytosol	69.96	84.79
KRH56574	Soybean	nucleus	76.13	78.72
Solyc02g086610.2.1	Tomato	plastid	76.13	78.56
VIT_04s0079g00530.t01	Wine grape	cytosol	65.23	76.94
HORVU2Hr1G087970.8	Barley	cytosol	61.93	75.82
Os04t0508200-01	Rice	plasma membrane, plastid	73.46	74.69
VIT_19s0085g01150.t01	Wine grape	peroxisome	63.79	74.52
CDX78585	Canola	mitochondrion, plastid	73.87	74.02
TraesCS2D01G361100.1	Wheat	mitochondrion	72.43	73.95
TraesCS2B01G381500.1	Wheat	mitochondrion	72.43	73.95
CDX70573	Canola	mitochondrion, plastid	73.46	73.91
Bra006262.1-P	Field mustard	mitochondrion, plastid	73.25	73.71
TraesCS2A01G363500.1	Wheat	mitochondrion	72.02	73.53
AT5G14590.1	Thale cress	mitochondrion, plastid	72.84	72.99
EES11093	Sorghum	mitochondrion	72.63	72.48
GSMUA_Achr2P23210_001	Banana	mitochondrion, plastid	72.84	71.95
KRG93238	Soybean	cytosol	32.92	69.26
Zm00001d003083_P002	Maize	mitochondrion	69.75	67.4
GSMUA_Achr5P00030_001	Banana	cytosol	8.64	56.0

Protein Annotations

KEGG:00020+1.1.1.42	KEGG:00480+1.1.1.42	KEGG:00720+1.1.1.42	EntrezGene:100249290	wikigene:100249290	Gene3D:3.40.718.10
MapMan:50.1.1	ProteinID:CCB58498	ProteinID:CCB58498.1	UniProt:F6HUY0	EMBL:FN596252	GO:GO:0000166
GO:GO:0000287	GO:GO:0003674	GO:GO:0003824	GO:GO:0004450	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0006091	GO:GO:0006099
GO:GO:0006102	GO:GO:0008150	GO:GO:0008152	GO:GO:0009507	GO:GO:0009534	GO:GO:0009536
GO:GO:0009570	GO:GO:0009579	GO:GO:0009987	GO:GO:0016491	GO:GO:0016616	GO:GO:0046872
GO:GO:0051287	GO:GO:0055114	InterPro:IsoCit/isopropylmalate_DH_CS	InterPro:IsoPropMal-DH-like_dom	InterPro:Isocitrate_DH_NADP	EntrezGene:LOC100249290
wikigene:LOC100249290	PFAM:PF00180	PIRSF:PIRSF000108	ScanProsite:PS00470	PANTHER:PTHR11822	PANTHER:PTHR11822:SF5
SMART:SM01329	SUPFAM:SSF53659	TIGR:TC57238	TIGRFAMs:TIGR00127	UniParc:UPI00021093E1	ArrayExpress:VIT_14s0066g00950
EnsemblPlantsGene:VIT_14s0066g00950	EnsemblPlants:VIT_14s0066g00950.t01	unigene:Vvi.1079	RefSeq:XP_002276200	RefSeq:XP_002276200.2	:

Description

Isocitrate dehydrogenase [NADP] [Source:UniProtKB/TrEMBL;Acc:F6HUY0]

Coordinates

chr14:+:27405259..27411829

Molecular Weight (calculated)

54940.8 Da

IEP (calculated)

7.568

GRAVY (calculated)

-0.277

Length

486 amino acids

Sequence
(BLAST)

001: MLRVLRPKLR FGAMSGAAIF PSSSSLALKN PNLSISSDQR FFNGILFKNG SILHDRFPNA SLRCFASAAT FDRVRVQNPI VEMDGDEMAR IMWRMIKDKL
101: IFPYLDLDIR YFDLGILNRD ATDDKVTVES AEATLKYNVA VKCATITPDE ARVKEFGLKS MWRSPNGTIR NILNGTVFRE PILCQNVPRI VPGWKKPICI
201: GRHAFGDQYR ATDTVVEGPG KLKLVFAPEN GDPPVELNVY DFKGPGIALA MYNVDESIRA FAESSMSLAF AKKWPLYLST KNTILKKYDG RFKDIFQDVY
301: EENWKQKFEE HSIWYEHRLI DDMVAYALKS DGGYVWACKN YDGDVQSDLL AQGFGSLGLM TSVLLSSDGK TLEAEAAHGT VTRHFRQYQK GLETSTNSIA
401: SIFAWTRGLE HRAKLDKNER LLDFVHKLEA ACIETVESGN MTKDLAILIH GPKASKEFYL NTEEFIDTVA HNLEAKQFCN QIHSYS

Best Arabidopsis Sequence Match ( AT5G14590.1 )
(BLAST)

001: MLNKLTHGVF TYRASLTAML SSSTSAGLSS SFVSSRFLSS GIFSSGASRN RVTFPVQFHR ASAVRCFASS GGSDRIQVQN PIVEMDGDEM TRVIWSMIKE
101: KLILPYLDLD IKYFDLGILN RDATDDKVTV ESAEAALKYN VAIKCATITP DEGRVKEFGL KSMWRSPNGT IRNILDGTVF REPIMCSNIP RLVPGWEKPI
201: CIGRHAFGDQ YRATDTVIKG PGKLKMVFVP EDGNAPVELD VYDFKGPGVA LAMYNVDESI RAFAESSMAM ALTKKWPLYL STKNTILKKY DGRFKDIFQE
301: VYEANWKQKF EEHSIWYEHR LIDDMVAYAV KSEGGYVWAC KNYDGDVQSD LLAQGFGSLG LMTSVLLSAD GKTLESEAAH GTVTRHFRLH QKGQETSTNS
401: IASIFAWTRG LEHRAKLDKN EKLMDFVKKL ESSCVNTVET GKMTKDLALL IHGPKVSRDL FLNTEEFIDA VASKLKTQFK ELPLV

Arabidopsis Description

Isocitrate dehydrogenase [NADP], chloroplastic/mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q8LPJ5]
SUBAcon: [mitochondrion,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.