Factsheet for Bra006262.1-P

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid

Predictor Summary:

plastid 6
mitochondrion 6
peroxisome 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX70573	Canola	mitochondrion, plastid	96.69	96.69
CDX78585	Canola	mitochondrion, plastid	91.51	91.13
AT5G14590.1	Thale cress	mitochondrion, plastid	88.82	88.45
GSMUA_Achr6P36990_001	Banana	mitochondrion	39.13	85.14
PGSC0003DMT400001262	Potato	cytosol	69.77	84.04
KRH56574	Soybean	nucleus	74.95	77.02
Bra004134.1-P	Field mustard	cytosol	65.63	76.94
Bra039746.1-P	Field mustard	cytosol	65.42	76.7
Solyc02g086610.2.1	Tomato	plastid	74.12	76.01
Bra038201.1-P	Field mustard	cytosol	65.42	75.42
HORVU2Hr1G087970.8	Barley	cytosol	61.7	75.06
TraesCS2A01G363500.1	Wheat	mitochondrion	73.5	74.58
Os04t0508200-01	Rice	plasma membrane, plastid	73.71	74.48
Bra003336.1-P	Field mustard	cytoskeleton, cytosol, peroxisome	58.39	74.41
TraesCS2B01G381500.1	Wheat	mitochondrion	73.29	74.37
TraesCS2D01G361100.1	Wheat	mitochondrion	72.88	73.95
EES11093	Sorghum	mitochondrion	74.12	73.51
VIT_14s0066g00950.t01	Wine grape	mitochondrion	73.71	73.25
GSMUA_Achr2P23210_001	Banana	mitochondrion, plastid	72.88	71.54
Zm00001d003083_P002	Maize	mitochondrion	71.01	68.19
KRG93238	Soybean	cytosol	31.68	66.23
GSMUA_Achr5P00030_001	Banana	cytosol	9.11	58.67

Protein Annotations

KEGG:00020+1.1.1.42	KEGG:00480+1.1.1.42	KEGG:00720+1.1.1.42	Gene3D:3.40.718.10	MapMan:50.1.1	EnsemblPlantsGene:Bra006262
EnsemblPlants:Bra006262.1	EnsemblPlants:Bra006262.1-P	GO:GO:0000166	GO:GO:0000287	GO:GO:0003674	GO:GO:0003824
GO:GO:0004450	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005739	GO:GO:0006091	GO:GO:0006099	GO:GO:0006102	GO:GO:0008150	GO:GO:0008152
GO:GO:0009507	GO:GO:0009534	GO:GO:0009536	GO:GO:0009570	GO:GO:0009579	GO:GO:0009987
GO:GO:0016491	GO:GO:0016616	GO:GO:0046872	GO:GO:0051287	GO:GO:0055114	InterPro:IsoCit/isopropylmalate_DH_CS
InterPro:IsoPropMal-DH-like_dom	InterPro:Isocitrate_DH_NADP	UniProt:M4CPX3	PFAM:PF00180	PIRSF:PIRSF000108	ScanProsite:PS00470
PANTHER:PTHR11822	PANTHER:PTHR11822:SF5	SMART:SM01329	SUPFAM:SSF53659	TIGRFAMs:TIGR00127	UniParc:UPI000253FBA8
SEG:seg	:	:	:	:	:

Description

AT5G14590 (E=3e-250) | isocitrate dehydrogenase, putative / NADP+ isocitrate dehydrogenase, putative

Coordinates

chrA03:-:2742124..2745093

Molecular Weight (calculated)

53776.3 Da

IEP (calculated)

8.114

GRAVY (calculated)

-0.255

Length

483 amino acids

Sequence
(BLAST)

001: MLNNLTRGGF MYRAGVTMLS SATSSSSSAA LSSSWKSPQF LSSGVFSGAA SRNRVAFPVR FHRALSVRCF ASSGGSDRIQ VQNPIVEMDG DEMTRVIWSM
101: IKDKLILPYL DLDIKYFDLG ILNRDATDDR VTVESAEAAL KYNVAIKCAT ITPDGGRVKE FGLKSMWRSP NGTIRNILDG TVFREPIMCG NIPRLVPGWR
201: KPICIGRHAF GDQYRATDTV IKGPGKLKMV FVPEDGTAAE ELDVYDFKGP GVALSMYNVD ESIRAFAESS MAMALAKKWP LYLSTKNTIL KKYDGRFKDI
301: FQEVYEANWK QKFEEHSIWY EHRLIDDMVA YAVKSEGGYV WACKNYDGDV QSDLLAQGFG SLGLMTSVLL SSDGKTLESE AAHGTVTRHF RLHQKGEETS
401: TNSIASIFAW TRGLEHRAKL DKNEKLMDFV KKLESSCVNT VETGKMTKDL ALLVHGPKVS RDVYLNTEEF IDAVASNLQS QLN

Best Arabidopsis Sequence Match ( AT5G14590.1 )
(BLAST)

001: MLNKLTHGVF TYRASLTAML SSSTSAGLSS SFVSSRFLSS GIFSSGASRN RVTFPVQFHR ASAVRCFASS GGSDRIQVQN PIVEMDGDEM TRVIWSMIKE
101: KLILPYLDLD IKYFDLGILN RDATDDKVTV ESAEAALKYN VAIKCATITP DEGRVKEFGL KSMWRSPNGT IRNILDGTVF REPIMCSNIP RLVPGWEKPI
201: CIGRHAFGDQ YRATDTVIKG PGKLKMVFVP EDGNAPVELD VYDFKGPGVA LAMYNVDESI RAFAESSMAM ALTKKWPLYL STKNTILKKY DGRFKDIFQE
301: VYEANWKQKF EEHSIWYEHR LIDDMVAYAV KSEGGYVWAC KNYDGDVQSD LLAQGFGSLG LMTSVLLSAD GKTLESEAAH GTVTRHFRLH QKGQETSTNS
401: IASIFAWTRG LEHRAKLDKN EKLMDFVKKL ESSCVNTVET GKMTKDLALL IHGPKVSRDL FLNTEEFIDA VASKLKTQFK ELPLV

Arabidopsis Description

Isocitrate dehydrogenase [NADP], chloroplastic/mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q8LPJ5]
SUBAcon: [mitochondrion,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.