Factsheet for GSMUA_Achr5P00030_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 3
cytosol 3
nucleus 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU2Hr1G087970.8	Barley	cytosol	61.33	11.59
PGSC0003DMT400001262	Potato	cytosol	57.33	10.72
GSMUA_Achr6P36990_001	Banana	mitochondrion	29.33	9.91
GSMUA_Achr4P00910_001	Banana	cytosol	53.33	9.76
TraesCS2D01G361100.1	Wheat	mitochondrion	61.33	9.66
TraesCS2B01G381500.1	Wheat	mitochondrion	61.33	9.66
GSMUA_Achr1P05110_001	Banana	cytosol	52.0	9.51
TraesCS2A01G363500.1	Wheat	mitochondrion	60.0	9.45
EES11093	Sorghum	mitochondrion	61.33	9.45
Os04t0508200-01	Rice	plasma membrane, plastid	60.0	9.41
KRH56574	Soybean	nucleus	58.67	9.36
GSMUA_Achr2P23210_001	Banana	mitochondrion, plastid	61.33	9.35
CDX70573	Canola	mitochondrion, plastid	60.0	9.32
CDX78585	Canola	mitochondrion, plastid	60.0	9.28
GSMUA_Achr7P14090_001	Banana	peroxisome	50.67	9.18
Zm00001d003083_P002	Maize	mitochondrion	61.33	9.15
Solyc02g086610.2.1	Tomato	plastid	57.33	9.13
Bra006262.1-P	Field mustard	mitochondrion, plastid	58.67	9.11
AT5G14590.1	Thale cress	mitochondrion, plastid	58.67	9.07
VIT_14s0066g00950.t01	Wine grape	mitochondrion	56.0	8.64
KRG93238	Soybean	cytosol	9.33	3.03

Protein Annotations

EnsemblPlants:GSMUA_Achr5P00030_001	EnsemblPlants:GSMUA_Achr5T00030_001	EnsemblPlantsGene:GSMUA_Achr5G00030_001	Gene3D:3.40.718.10	GO:GO:0003674	GO:GO:0003824
GO:GO:0004450	GO:GO:0006102	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0055114
InterPro:Isocitrate_DH_NADP	KEGG:00020+1.1.1.42	KEGG:00480+1.1.1.42	KEGG:00720+1.1.1.42	PANTHER:PTHR11822	PANTHER:PTHR11822:SF21
SUPFAM:SSF53659	UniParc:UPI000294DD7F	UniProt:M0SUD2	MapMan:35.1	:	:

Description

Hypothetical protein [Source:GMGC_GENE;Acc:GSMUA_Achr5G00030_001]

Coordinates

chr5:-:6377..12698

Molecular Weight (calculated)

8241.0 Da

IEP (calculated)

8.267

GRAVY (calculated)

-0.116

Length

75 amino acids

Sequence
(BLAST)

1: MTSVLLSSDG KTLEAETAHG TVTRHFRLHQ RGQETSMNSI ASERILHSLS MVQVICVLIN EKSCKDVALT SSLKN

Best Arabidopsis Sequence Match ( AT5G14590.1 )
(BLAST)

001: MLNKLTHGVF TYRASLTAML SSSTSAGLSS SFVSSRFLSS GIFSSGASRN RVTFPVQFHR ASAVRCFASS GGSDRIQVQN PIVEMDGDEM TRVIWSMIKE
101: KLILPYLDLD IKYFDLGILN RDATDDKVTV ESAEAALKYN VAIKCATITP DEGRVKEFGL KSMWRSPNGT IRNILDGTVF REPIMCSNIP RLVPGWEKPI
201: CIGRHAFGDQ YRATDTVIKG PGKLKMVFVP EDGNAPVELD VYDFKGPGVA LAMYNVDESI RAFAESSMAM ALTKKWPLYL STKNTILKKY DGRFKDIFQE
301: VYEANWKQKF EEHSIWYEHR LIDDMVAYAV KSEGGYVWAC KNYDGDVQSD LLAQGFGSLG LMTSVLLSAD GKTLESEAAH GTVTRHFRLH QKGQETSTNS
401: IASIFAWTRG LEHRAKLDKN EKLMDFVKKL ESSCVNTVET GKMTKDLALL IHGPKVSRDL FLNTEEFIDA VASKLKTQFK ELPLV

Arabidopsis Description

Isocitrate dehydrogenase [NADP], chloroplastic/mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q8LPJ5]
SUBAcon: [mitochondrion,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.