Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 4
- vacuole 1
- mitochondrion 2
- plastid 1
- cytoskeleton 1
Predictors | GFP | MS/MS | Papers |
---|---|---|---|
PPI
No PPI Data
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
GSMUA_Achr6P36990_001 | Banana | mitochondrion | 48.63 | 87.84 |
Solyc02g086610.2.1 | Tomato | plastid | 99.0 | 84.29 |
HORVU2Hr1G087970.8 | Barley | cytosol | 74.06 | 74.81 |
PGSC0003DMT400081790 | Potato | cytosol, mitochondrion | 77.31 | 74.7 |
KRH56574 | Soybean | nucleus | 86.78 | 74.04 |
Os04t0508200-01 | Rice | plasma membrane, plastid | 85.79 | 71.97 |
TraesCS2A01G363500.1 | Wheat | mitochondrion | 84.79 | 71.43 |
TraesCS2B01G381500.1 | Wheat | mitochondrion | 84.54 | 71.22 |
TraesCS2D01G361100.1 | Wheat | mitochondrion | 84.04 | 70.8 |
CDX70573 | Canola | mitochondrion, plastid | 85.04 | 70.6 |
EES11093 | Sorghum | mitochondrion | 85.54 | 70.43 |
CDX78585 | Canola | mitochondrion, plastid | 85.04 | 70.31 |
VIT_14s0066g00950.t01 | Wine grape | mitochondrion | 84.79 | 69.96 |
Bra006262.1-P | Field mustard | mitochondrion, plastid | 84.04 | 69.77 |
AT5G14590.1 | Thale cress | mitochondrion, plastid | 84.04 | 69.48 |
GSMUA_Achr2P23210_001 | Banana | mitochondrion, plastid | 84.54 | 68.9 |
Zm00001d003083_P002 | Maize | mitochondrion | 83.04 | 66.2 |
KRG93238 | Soybean | cytosol | 36.66 | 63.64 |
PGSC0003DMT400034694 | Potato | peroxisome | 67.58 | 60.9 |
GSMUA_Achr5P00030_001 | Banana | cytosol | 10.72 | 57.33 |
Protein Annotations
KEGG:00020+1.1.1.42 | KEGG:00480+1.1.1.42 | KEGG:00720+1.1.1.42 | Gene3D:3.40.718.10 | MapMan:50.1.1 | ProteinID:CAA63220 |
ProteinID:CAA63220.1 | GO:GO:0000166 | GO:GO:0000287 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004450 |
GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005739 |
GO:GO:0006091 | GO:GO:0006099 | GO:GO:0006102 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009507 |
GO:GO:0009534 | GO:GO:0009536 | GO:GO:0009570 | GO:GO:0009579 | GO:GO:0009987 | GO:GO:0016491 |
GO:GO:0016616 | GO:GO:0046872 | GO:GO:0051287 | GO:GO:0055114 | InterPro:IsoCit/isopropylmalate_DH_CS | InterPro:IsoPropMal-DH-like_dom |
InterPro:Isocitrate_DH_NADP | UniProt:M0ZI69 | PFAM:PF00180 | EnsemblPlantsGene:PGSC0003DMG400000481 | PGSC:PGSC0003DMG400000481 | EnsemblPlants:PGSC0003DMT400001262 |
PIRSF:PIRSF000108 | ScanProsite:PS00470 | PANTHER:PTHR11822 | PANTHER:PTHR11822:SF5 | SMART:SM01329 | SUPFAM:SSF53659 |
TIGRFAMs:TIGR00127 | UniParc:UPI00029635A1 | EMBL:X92486 | SEG:seg | : | : |
Description
Isocitrate dehydrogenase [NADP] [Source:PGSC_GENE;Acc:PGSC0003DMG400000481]
Coordinates
chr2:-:47215193..47220983
Molecular Weight (calculated)
45313.2 Da
IEP (calculated)
6.518
GRAVY (calculated)
-0.336
Length
401 amino acids
Sequence
(BLAST)
(BLAST)
001: MDGDEMTRVI WKMIKDKLIY PYLELDTKYY DLGILNRDAT DDQVTVESAE ATLKYNVAVK CATITPDETR VKEFGLKSMW KSPNGTIRNI LNGTVFREPI
101: LCTNIPRIVP GWKKPICIGR HAFGDQYRAT DSIINGPGKL KMVFVPENGE SPMELDVYDF KGPGIALAMY NVDQSIRAFA ESSMSMAFSK KWPLYLSTKN
201: TILKKYDGRF KDIFQEVYEE KWKQQFEEHS IWYEHRLIDD MVAYALKSEG GYVWACKNYD GDVQSDLLAQ GFGSLGLMTS VLLSSDGKTL EAEAAHGTVT
301: RHFRLHQKGQ ETSTNSVASI FAWTRGLGHR AQLDGNQKLL EFVHTLEASC IGTIESGKMT KDLAILAHGP KVSREFYLNT EEFIDAVAQK LQEKLHASVP
401: I
101: LCTNIPRIVP GWKKPICIGR HAFGDQYRAT DSIINGPGKL KMVFVPENGE SPMELDVYDF KGPGIALAMY NVDQSIRAFA ESSMSMAFSK KWPLYLSTKN
201: TILKKYDGRF KDIFQEVYEE KWKQQFEEHS IWYEHRLIDD MVAYALKSEG GYVWACKNYD GDVQSDLLAQ GFGSLGLMTS VLLSSDGKTL EAEAAHGTVT
301: RHFRLHQKGQ ETSTNSVASI FAWTRGLGHR AQLDGNQKLL EFVHTLEASC IGTIESGKMT KDLAILAHGP KVSREFYLNT EEFIDAVAQK LQEKLHASVP
401: I
001: MLNKLTHGVF TYRASLTAML SSSTSAGLSS SFVSSRFLSS GIFSSGASRN RVTFPVQFHR ASAVRCFASS GGSDRIQVQN PIVEMDGDEM TRVIWSMIKE
101: KLILPYLDLD IKYFDLGILN RDATDDKVTV ESAEAALKYN VAIKCATITP DEGRVKEFGL KSMWRSPNGT IRNILDGTVF REPIMCSNIP RLVPGWEKPI
201: CIGRHAFGDQ YRATDTVIKG PGKLKMVFVP EDGNAPVELD VYDFKGPGVA LAMYNVDESI RAFAESSMAM ALTKKWPLYL STKNTILKKY DGRFKDIFQE
301: VYEANWKQKF EEHSIWYEHR LIDDMVAYAV KSEGGYVWAC KNYDGDVQSD LLAQGFGSLG LMTSVLLSAD GKTLESEAAH GTVTRHFRLH QKGQETSTNS
401: IASIFAWTRG LEHRAKLDKN EKLMDFVKKL ESSCVNTVET GKMTKDLALL IHGPKVSRDL FLNTEEFIDA VASKLKTQFK ELPLV
101: KLILPYLDLD IKYFDLGILN RDATDDKVTV ESAEAALKYN VAIKCATITP DEGRVKEFGL KSMWRSPNGT IRNILDGTVF REPIMCSNIP RLVPGWEKPI
201: CIGRHAFGDQ YRATDTVIKG PGKLKMVFVP EDGNAPVELD VYDFKGPGVA LAMYNVDESI RAFAESSMAM ALTKKWPLYL STKNTILKKY DGRFKDIFQE
301: VYEANWKQKF EEHSIWYEHR LIDDMVAYAV KSEGGYVWAC KNYDGDVQSD LLAQGFGSLG LMTSVLLSAD GKTLESEAAH GTVTRHFRLH QKGQETSTNS
401: IASIFAWTRG LEHRAKLDKN EKLMDFVKKL ESSCVNTVET GKMTKDLALL IHGPKVSRDL FLNTEEFIDA VASKLKTQFK ELPLV
Arabidopsis Description
Isocitrate dehydrogenase [NADP], chloroplastic/mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q8LPJ5]
SUBAcon: [mitochondrion,plastid]
SUBAcon: [mitochondrion,plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.