Factsheet for PGSC0003DMT400081790

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, cytosol

Predictor Summary:

cytosol 2
vacuole 1
peroxisome 3
mitochondrion 1
plastid 1
cytoskeleton 1

Predictors

GFP

MS/MS

Papers

cytosol: 22313117
mitochondrion: 24351685

msms PMID: 24351685 doi

F Salvato, JF Havelund, M Chen, RS Rao, A Rogowska-Wrzesinska, ON Jensen, DR Gang, JJ Thelen, IM Møller

Department of Biochemistry and Interdisciplinary Plant Group, University of Missouri, Columbia, Missouri 65211.

msms PMID: 22313117 doi

S Lim, K Chisholm, RH Coffin, RD Peters, KI Al-Mughrabi, G Wang-Pruski, DM Pinto

Department of Plant and Animal Sciences, Nova Scotia Agricultural College, Truro, Nova Scotia, Canada.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g005560.2.1	Tomato	extracellular, plastid	98.8	98.8
KRH17285	Soybean	endoplasmic reticulum, mitochondrion	89.4	89.83
KRH72930	Soybean	endoplasmic reticulum, nucleus	89.16	89.59
VIT_04s0079g00530.t01	Wine grape	cytosol	88.43	89.08
Bra004134.1-P	Field mustard	cytosol	88.19	88.83
CDY07472	Canola	cytosol	88.19	88.83
CDY16428	Canola	cytosol	87.95	88.59
Bra039746.1-P	Field mustard	cytosol	87.95	88.59
CDY60868	Canola	cytosol	87.71	88.35
AT1G65930.1	Thale cress	cytosol	87.23	88.29
CDY39261	Canola	cytosol	87.71	88.14
Bra038201.1-P	Field mustard	cytosol	88.43	87.59
CDY20354	Canola	cytosol	87.71	86.87
CDY68004	Canola	cytosol	34.46	86.14
CDY68003	Canola	endoplasmic reticulum	35.42	77.37
PGSC0003DMT400001262	Potato	cytosol	74.7	77.31
PGSC0003DMT400034694	Potato	peroxisome	78.55	73.26

Protein Annotations

KEGG:00020+1.1.1.42	KEGG:00480+1.1.1.42	KEGG:00720+1.1.1.42	EntrezGene:102591365	Gene3D:3.40.718.10	MapMan:50.1.1
ProteinID:CAA53300	ProteinID:CAA53300.1	GO:GO:0000166	GO:GO:0000287	GO:GO:0003674	GO:GO:0003824
GO:GO:0004450	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005975	GO:GO:0006091	GO:GO:0006097	GO:GO:0006099	GO:GO:0006102	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016491	GO:GO:0016616	GO:GO:0046872	GO:GO:0051287
GO:GO:0055114	InterPro:IsoCit/isopropylmalate_DH_CS	InterPro:IsoPropMal-DH-like_dom	InterPro:Isocitrate_DH_NADP	UniProt:M1D530	PFAM:PF00180
EnsemblPlantsGene:PGSC0003DMG400032124	PGSC:PGSC0003DMG400032124	EnsemblPlants:PGSC0003DMT400081790	PIRSF:PIRSF000108	ScanProsite:PS00470	PANTHER:PTHR11822
PANTHER:PTHR11822:SF24	SMART:SM01329	SUPFAM:SSF53659	TIGRFAMs:TIGR00127	UniParc:UPI000295428A	EMBL:X75638
RefSeq:XP_006354121.1	:	:	:	:	:

Description

Isocitrate dehydrogenase [NADP] [Source:PGSC_GENE;Acc:PGSC0003DMG400032124]

Coordinates

chr1:+:1114264..1120380

Molecular Weight (calculated)

46681.8 Da

IEP (calculated)

6.608

GRAVY (calculated)

-0.317

Length

415 amino acids

Sequence
(BLAST)

001: MAFQKITVQN PIVEMDGDEM TRVIWKSIKD KLILPFLELD IKYFDLGLPH RDATDDKVTV ESAEATQKYN VAIKCATITP DEARVTEFNL KSMWRSPNGT
101: IRNILNGTVF REPIMCKNIP RLVPGWTKPI CIGRHAFGDQ YRATDTVIKG AGKLKLVFVP EGSDEKTEFE VYNFTGAGGV ALSMYNTDES VRSFAEASMN
201: MAFQKKWPLY LSTKNTILKK YDGRFKDIFQ EVYEANWKSK YEEAGIWYEH RLIDDMVAYA LKSEGGYVWA CKNYDGDVQS DFLAQGFGSL GLMTSVLVCP
301: DGKTIEAEAA HGTVTRHYRV HQKGGETSTN SIASIFAWTR GLAHRATLDN NERLLDFTEK LEAACIGAVE SGKMTKDLAL IIHGSKLSRE HYLNTEEFID
401: AVADELKARL LKAKA

Best Arabidopsis Sequence Match ( AT1G65930.1 )
(BLAST)

001: MAFEKIKVAN PIVEMDGDEM TRVIWKSIKD KLITPFVELD IKYFDLGLPH RDATDDKVTI ESAEATKKYN VAIKCATITP DEGRVTEFGL KQMWRSPNGT
101: IRNILNGTVF REPIICKNVP KLVPGWTKPI CIGRHAFGDQ YRATDAVIKG PGKLTMTFEG KDGKTETEVF TFTGEGGVAM AMYNTDESIR AFADASMNTA
201: YEKKWPLYLS TKNTILKKYD GRFKDIFQEV YEASWKSKYD AAGIWYEHRL IDDMVAYALK SEGGYVWACK NYDGDVQSDF LAQGFGSLGL MTSVLVCPDG
301: KTIEAEAAHG TVTRHFRVHQ KGGETSTNSI ASIFAWTRGL AHRAKLDDNA KLLDFTEKLE AACVGTVESG KMTKDLALII HGSKLSRDTY LNTEEFIDAV
401: AAELKERLNA

Arabidopsis Description

CICDHIsocitrate dehydrogenase [NADP] [Source:UniProtKB/TrEMBL;Acc:A0A178W7K0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.