CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, nucleus

Predictor Summary:

cytosol 4
plastid 2
mitochondrion 2
peroxisome 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161
endoplasmic reticulum: 27224218

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH17285	Soybean	endoplasmic reticulum, mitochondrion	99.27	99.27
Solyc01g005560.2.1	Tomato	extracellular, plastid	90.07	89.64
PGSC0003DMT400081790	Potato	cytosol, mitochondrion	89.59	89.16
VIT_04s0079g00530.t01	Wine grape	cytosol	88.38	88.59
AT1G65930.1	Thale cress	cytosol	87.65	88.29
Bra039746.1-P	Field mustard	cytosol	87.17	87.38
CDY07472	Canola	cytosol	87.17	87.38
CDY16428	Canola	cytosol	87.17	87.38
CDY60868	Canola	cytosol	87.17	87.38
Bra004134.1-P	Field mustard	cytosol	86.92	87.14
CDY39261	Canola	cytosol	86.68	86.68
Solyc11g011930.1.1	Tomato	plastid, unclear	86.92	85.48
Bra038201.1-P	Field mustard	cytosol	86.2	84.96
CDY20354	Canola	cytosol	85.96	84.73
KRH13828	Soybean	nucleus, peroxisome	84.26	83.65
KRH43614	Soybean	peroxisome	78.93	83.59
CDY68004	Canola	cytosol	33.41	83.13
CDY68003	Canola	endoplasmic reticulum	35.35	76.84
PGSC0003DMT400034694	Potato	peroxisome	74.58	69.21
KRH56574	Soybean	nucleus	78.45	68.94
KRG93238	Soybean	cytosol	34.87	62.34

Protein Annotations

KEGG:00020+1.1.1.42	KEGG:00480+1.1.1.42	KEGG:00720+1.1.1.42	EntrezGene:100786103	Gene3D:3.40.718.10	MapMan:50.1.1
EMBL:ACUP02001257	EMBL:BT093651	UniProt:C6T857	EnsemblPlantsGene:GLYMA_02G241200	GO:GO:0000166	GO:GO:0000287
GO:GO:0003674	GO:GO:0003824	GO:GO:0004450	GO:GO:0005488	GO:GO:0006091	GO:GO:0006099
GO:GO:0006102	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016491	GO:GO:0016616
GO:GO:0046872	GO:GO:0051287	GO:GO:0055114	InterPro:IsoCit/isopropylmalate_DH_CS	InterPro:IsoPropMal-DH-like_dom	InterPro:Isocitrate_DH_NADP
EnsemblPlants:KRH72930	ProteinID:KRH72930	ProteinID:KRH72930.1	PFAM:PF00180	PIRSF:PIRSF000108	ScanProsite:PS00470
PANTHER:PTHR11822	PANTHER:PTHR11822:SF24	MetaCyc:PWY-5913	MetaCyc:PWY-6549	MetaCyc:PWY-6728	MetaCyc:PWY-6969
MetaCyc:PWY-7124	MetaCyc:PWY-7254	MetaCyc:PWY-7268	SMART:SM01329	SUPFAM:SSF53659	TIGRFAMs:TIGR00127
UniParc:UPI0001B15EF4	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr2:+:42962596..42968168

Molecular Weight (calculated)

46082.2 Da

IEP (calculated)

6.136

GRAVY (calculated)

-0.205

Length

413 amino acids

Sequence
(BLAST)

001: MAAFQKIKVV NPIVEMDGDE MTRVIWKSIK DKLILPFLEL DIKYYDLGLP YRDETDDKVT IESAEATLKY NVAIKCATIT PDEARVKEFG LKSMWKSPNG
101: TIRNILNGTV FREPILCKNI PRLVPGWTKA ICIGRHAFGD QYRATDTVIK GAGKLKLVFV PEGQGEETEF EVFNFTGEGG VSLAMYNTDE SIRSFAEASM
201: ATALEKKWPL YLSTKNTILK KYDGRFKDIF QEVYEASWKS KFEAAGIWYE HRLIDDMVAY ALKSEGGYVW ACKNYDGDVQ SDFLAQGFGS LGLMTSVLVC
301: PDGKTIEAEA AHGTVTRHFR VHQKGGETST NSIASIFAWT RGLAHRAKLD DNAKLLDFTE KLEAACIGVV EAGKMTKDLA LILHGSKLSR EHYLNTEEFI
401: DAVAAELSAK LST

Best Arabidopsis Sequence Match ( AT1G65930.1 )
(BLAST)

001: MAFEKIKVAN PIVEMDGDEM TRVIWKSIKD KLITPFVELD IKYFDLGLPH RDATDDKVTI ESAEATKKYN VAIKCATITP DEGRVTEFGL KQMWRSPNGT
101: IRNILNGTVF REPIICKNVP KLVPGWTKPI CIGRHAFGDQ YRATDAVIKG PGKLTMTFEG KDGKTETEVF TFTGEGGVAM AMYNTDESIR AFADASMNTA
201: YEKKWPLYLS TKNTILKKYD GRFKDIFQEV YEASWKSKYD AAGIWYEHRL IDDMVAYALK SEGGYVWACK NYDGDVQSDF LAQGFGSLGL MTSVLVCPDG
301: KTIEAEAAHG TVTRHFRVHQ KGGETSTNSI ASIFAWTRGL AHRAKLDDNA KLLDFTEKLE AACVGTVESG KMTKDLALII HGSKLSRDTY LNTEEFIDAV
401: AAELKERLNA

Arabidopsis Description

CICDHIsocitrate dehydrogenase [NADP] [Source:UniProtKB/TrEMBL;Acc:A0A178W7K0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.