CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
mitochondrion 1
cytoskeleton 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytoskeleton, cytosol
BaCelLo:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytoskeleton
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY32970
CDY43592

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G65930.1	CDY32970	AT5G42980.1	15352244
AT1G65930.1	CDY43592	AT5G42980.1	15352244

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY07472	Canola	cytosol	99.27	99.51
Bra004134.1-P	Field mustard	cytosol	99.03	99.27
CDY16428	Canola	cytosol	98.79	99.03
CDY60868	Canola	cytosol	98.55	98.79
AT1G65930.1	Thale cress	cytosol	96.13	96.83
CDY20354	Canola	cytosol	96.37	94.99
CDY68004	Canola	cytosol	36.8	91.57
VIT_04s0079g00530.t01	Wine grape	cytosol	87.89	88.11
PGSC0003DMT400081790	Potato	cytosol, mitochondrion	88.14	87.71
Solyc01g005560.2.1	Tomato	extracellular, plastid	87.65	87.23
KRH17285	Soybean	endoplasmic reticulum, mitochondrion	87.17	87.17
CDY68003	Canola	endoplasmic reticulum	39.95	86.84
KRH72930	Soybean	endoplasmic reticulum, nucleus	86.68	86.68
Solyc11g011930.1.1	Tomato	plastid, unclear	84.5	83.1
CDX67740	Canola	cytoskeleton, cytosol, peroxisome	84.26	81.69
CDY46358	Canola	peroxisome	69.01	76.0
CDX98289	Canola	peroxisome	44.31	69.32
PGSC0003DMT400034694	Potato	peroxisome	71.43	66.29
CDX70573	Canola	mitochondrion, plastid	76.76	65.63
CDX78585	Canola	mitochondrion, plastid	76.51	65.15

Protein Annotations

KEGG:00020+1.1.1.42	KEGG:00480+1.1.1.42	KEGG:00720+1.1.1.42	Gene3D:3.40.718.10	MapMan:50.1.1	GO:A0A078HNT8
UniProt:A0A078HNT8	EnsemblPlants:CDY39261	ProteinID:CDY39261	ProteinID:CDY39261.1	GO:GO:0000166	GO:GO:0000287
GO:GO:0003674	GO:GO:0003824	GO:GO:0004450	GO:GO:0005488	GO:GO:0006091	GO:GO:0006099
GO:GO:0006102	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016491	GO:GO:0016616
GO:GO:0046872	GO:GO:0051287	GO:GO:0055114	EnsemblPlantsGene:GSBRNA2T00067488001	InterPro:IsoCit/isopropylmalate_DH_CS	InterPro:IsoPropMal-DH-like_dom
InterPro:Isocitrate_DH_NADP	PFAM:PF00180	PIRSF:PIRSF000108	ScanProsite:PS00470	PANTHER:PTHR11822	PANTHER:PTHR11822:SF24
MetaCyc:PWY-5913	MetaCyc:PWY-6549	MetaCyc:PWY-6728	MetaCyc:PWY-6969	MetaCyc:PWY-7124	MetaCyc:PWY-7254
MetaCyc:PWY-7268	SMART:SM01329	SUPFAM:SSF53659	TIGRFAMs:TIGR00127	UniParc:UPI0004EDBC56	SEG:seg

Description

BnaC06g27300DIsocitrate dehydrogenase [NADP] [Source:UniProtKB/TrEMBL;Acc:A0A078HNT8]

Coordinates

chrLK032444:-:66280..69474

Molecular Weight (calculated)

46070.0 Da

IEP (calculated)

6.608

GRAVY (calculated)

-0.338

Length

413 amino acids

Sequence
(BLAST)

001: MAFEKIKVAN PIVEMDGDEM TRVIWKSIKD KLITPFVELD IKYFDLGLPH RDATDDKVTV ESAEATKKYN VAIKCATITP DEGRVTEFGL KQMWRSPNGT
101: IRNILNGTVF REPILCKNVP KLVPGWTKPI CIGRHAFGDQ YRATDAVIKG PGKLTMTFEG KDGKTETEVF TFTGEGGVAM AMYNTDESIR AFAEASMNTA
201: YEKKWPLYLS TKNTILKKYD GRHVDNIFQE VYEASWKSKY EAAGIWYEHR LIDDMVAYAL KSEGGYVWAC KNYDGDVQSD FLAQGFGSLG LMTSVLVCPD
301: GKTIEAEAAH GTVTRHYRVH QKGGETSTNS IASIFAWTRG LAHRAKLDDN SKLLEFTEKL EAACVGTVES GKMTKDLALI IHGSKLSRDT YLNTEEFIDA
401: VADELKTRLG VKA

Best Arabidopsis Sequence Match ( AT1G65930.1 )
(BLAST)

001: MAFEKIKVAN PIVEMDGDEM TRVIWKSIKD KLITPFVELD IKYFDLGLPH RDATDDKVTI ESAEATKKYN VAIKCATITP DEGRVTEFGL KQMWRSPNGT
101: IRNILNGTVF REPIICKNVP KLVPGWTKPI CIGRHAFGDQ YRATDAVIKG PGKLTMTFEG KDGKTETEVF TFTGEGGVAM AMYNTDESIR AFADASMNTA
201: YEKKWPLYLS TKNTILKKYD GRFKDIFQEV YEASWKSKYD AAGIWYEHRL IDDMVAYALK SEGGYVWACK NYDGDVQSDF LAQGFGSLGL MTSVLVCPDG
301: KTIEAEAAHG TVTRHFRVHQ KGGETSTNSI ASIFAWTRGL AHRAKLDDNA KLLDFTEKLE AACVGTVESG KMTKDLALII HGSKLSRDTY LNTEEFIDAV
401: AAELKERLNA

Arabidopsis Description

CICDHIsocitrate dehydrogenase [NADP] [Source:UniProtKB/TrEMBL;Acc:A0A178W7K0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.